FastQCFastQC Report
Sat 31 Dec 2022
SRR5848809.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848809.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182142
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT10090.5539633912002723No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC9410.5166298821798377No Hit
TCGAATGGGGCCTGGCTTACTTCACACAACATAATGTCCTTCAGGTTTATCC3180.1745890568896795No Hit
CATAGCGGGGGCACTGACATTTTTGAATGAGACAGTCCTCCCCTTTAAGAAA2210.12133390431641247No Hit
AACCCCGGCAACTACTAATTTTTTTTTACTGTCTTCATAGTTTTGCTTTTTC2070.11364759363573476No Hit
GGCACGGGGGTGGGCTACACGACCGCTTTTGGGGCCATGTTTGCAAAGACCT2040.11200052706130381No Hit
TTTCTAGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA2000.10980443829539589No Hit
CATCAAGGGGGCGGTCTGGCCTAGGGATCTTCCCCGTTGCCCCTTTGGGGCG2000.10980443829539589No Hit
TGTCAGGGGACCTGTCTGCTGCCAGCACAGTAGGTCCCGGCCAGCTCTGGAG1980.10870639391244194No Hit
ACTTTTGGGTTCTAAAGAGCAAGTTATTAAAGAGTTATGCTGAGATATATCT1900.1043142163806261No Hit
TCACATGGGATAGAAAAATGTGCCATTCATTTGTTGGGTAGAATAAAGTTGT1900.1043142163806261No Hit
TCGTTGGGGGAGCTTATCCCGGCCACCACCTATCACGTCCAGCCGGCGTGCG1880.10321617199767215No Hit
ACATAGGGGTAGGCCGGGGTATGGTAGTTTGATAAAACATTTAGGGCATAGG1880.10321617199767215No Hit
ACATATGGGGAATCCCCTCAAAAGGGGTCTGGTTGCTGCTTACAGTGGTGAC1870.10266714980619518No Hit
TGCCGTGGGGGAAGCAATTAAACCCTCTCAGAAAACCAGAGAGAAGGAGAAA1840.10102008323176423No Hit
CTCAAAGGGGCGCTTCTTCCGGGTGGGGCCCCGGGCCGAGGCGATGGCGCCC1840.10102008323176423No Hit
TTTAAGGGGTAGTCAGGGGGTGTTGTTTTCATGTAATAAATTTTCATAAATA1830.10047106104028726No Hit
TCAACTGGGTTATCGGCAGCTGCTGAGCGTGGAGCCCGGCGCCCCAGGCCTC1830.10047106104028726No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)