FastQCFastQC Report
Sat 31 Dec 2022
SRR5848808.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848808.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180310
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC8890.49303976484942597No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT8860.49137596361821306No Hit
TCGAATGGGGCCTGGCTTACTTCACACAACATAATGTCCTTCAGGTTTATCC3260.180799733791803No Hit
AACCCCGGCAACTACTAATTTTTTTTTACTGTCTTCATAGTTTTGCTTTTTC2410.1336586989074372No Hit
TCACATGGGATAGAAAAATGTGCCATTCATTTGTTGGGTAGAATAAAGTTGT2160.11979368864732959No Hit
GGCACGGGGGTGGGCTACACGACCGCTTTTGGGGCCATGTTTGCAAAGACCT1990.11036548167045644No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCCTGTCTCTTATAC1910.10592867838722202No Hit
TGATACGGGCGATCTGCTGGCGGGAGGCCCCTACGGGCTACTACAACCCTTC1890.1048194775664134No Hit
CGCGCTGGGATCCCATCTCAAGAAGAGAAAGATGGAGAGAGGCTCTTACCTT1880.1042648771560091No Hit
CCTGCGGGGACGTGCTGAGCTCGCGGGTGCGCACGGGCCGCAGCATCCGTGG1870.10371027674560479No Hit
CAAACCCTACCACTGCTTTATCAACTAAGTTTCTGTCATAGTTTAAGTCCTT1860.1031556763352005No Hit
GCAAACGGGTGAGATTAGTTGTTTCAAGTAGGAGACAGAAAAGTTCTGTTTT1840.10204647551439187No Hit
AAGTTAGGGGGAACTTGGCTCAGCTGCCGGGCTGCTCCGGTTGGAAACGCCA1830.10149187510398758No Hit
AAGCTGGGGGTCACAGGGGTCTTAGTCGTGACCACATGGCTGTTGTCAGGTC1830.10149187510398758No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)