FastQCFastQC Report
Sat 31 Dec 2022
SRR5848783.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848783.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105827
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC9730.9194250994547706No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT9110.8608389163446001No Hit
TTGCTTGGGAACAGGGACTTGGTTCAATAAATTATGGTATATCCATTAGTGG1910.18048324151681516No Hit
ACACGTGGGGAGATTGCCGGTCTCTCCTATTCAGGTGACTTTCGGATGGTGG1480.13985088871460025No Hit
CTAACAGGGGAAAGCCGGAAGGGGCAAGACGGGTTCAGTTCGTCATGGGGCT1460.1379610118400786No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGA1440.136071134965557No Hit
TAGTCAGGGGGTATTTCTATTCTTTAAATAAAATGCAAGTTGACATCTTGAA1410.13323631965377455No Hit
TTGCACGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1320.12473187371842724No Hit
GCTAGGGGGCAATTACTGAGAGACAACTTGACATTGTGGACATCGGATACCC1310.12378693528116644No Hit
AAATGTGGGTGGAAAACACATGGATGTTGTTTAGTGAAGTTGAACATGTACG1310.12378693528116644No Hit
CTAGCGGGGTGGGTTAGCAGAGGGCAAATTGGAGGATTCCTTTGAGGAAATG1310.12378693528116644No Hit
CGTACAGGGGAGATTCTGAATTGTTAAGTATAGAAATCAATTTGATTTTTGT1300.12284199684390563No Hit
AAATATTGGGGCTCTTCCGATCTAACAACGGGAAAAAAAGAGCAAAGGAAAC1300.12284199684390563No Hit
CGATTAGGGATTTAAGTAGATTATACGACATCATTTTTAAAAAAGCAGTTAG1230.11622742778307994No Hit
TCGTGCTGGGGTGTTCACCTATTGAAAATTAAAAATACATTTTGTTTATGGA1210.1143375509085583No Hit
TGCTTTGGGAAGTGGGTGCTGGGCTGGTATGGGAGCCCCGGGTCCCTGGAGC1200.11339261247129749No Hit
CAAACCGGGATCCCTTGTCTATTCCTGTCTGTATAAAGTGTTTCATTATGAC1200.11339261247129749No Hit
CTACCTAAGGGTACTAGACTGTGGATATTTCCATATGTTGACAGGATGTGGT1180.11150273559677587No Hit
ACTTCTGGGGTGATTGTCTATCAGCATCTTAAAAAAGTTTCTATAATTTGTT1150.10866792028499342No Hit
TTGTACGGGAATGAACATTCATGTAGTCTTTACCTAAACTCACCATTAACAT1140.10772298184773262No Hit
CCATTAGGGCCAGTGGTTACCTATCACAATTAACAAAGAAATCCAAGCTCTT1110.10488816653595019No Hit
CAGGTAGGGCTGGGTACTCTTCTTGTATGTGTTTCCATATATCTCTATGGAT1110.10488816653595019No Hit
CTATTAGGGGTGGGTGAGAACGGACTCATTCTTACGCCCCTGGGGCGGTACC1110.10488816653595019No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCCTGTCTCTTATAC1100.10394322809868937No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAAACTCGTATGC1100.10394322809868937No Hit
TATAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1090.10299828966142857No Hit
AGTTTGGGGGTCTCGCTCCGGGGCGGAAAGTGGGTCAGGGCCGGGCCGGCGG1090.10299828966142857No Hit
AATAGGGTGAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAA1090.10299828966142857No Hit
CTTCCTGGGCTACCGTGCCTGGCCTAAACCTTACGCTTTTGAGGTTGAGTGC1080.10205335122416774No Hit
ACTTCAGGGGGCGGCTGGGAGCGGGTGGGCGGCCGGGAGGCCGGAGCAGCAC1070.10110841278690692No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)