FastQCFastQC Report
Sat 31 Dec 2022
SRR5848782.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848782.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105566
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC9680.9169619006119395No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT8940.8468635734990432No Hit
ACACGTGGGGAGATTGCCGGTCTCTCCTATTCAGGTGACTTTCGGATGGTGG1710.1619839721122331No Hit
CTAACAGGGGAAAGCCGGAAGGGGCAAGACGGGTTCAGTTCGTCATGGGGCT1550.14682757706079608No Hit
TTGCTTGGGAACAGGGACTTGGTTCAATAAATTATGGTATATCCATTAGTGG1530.14493302767936644No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGA1410.1335657313907887No Hit
CGATTAGGGATTTAAGTAGATTATACGACATCATTTTTAAAAAAGCAGTTAG1410.1335657313907887No Hit
GCTAGGGGGCAATTACTGAGAGACAACTTGACATTGTGGACATCGGATACCC1350.12788208324649983No Hit
CAAACCGGGATCCCTTGTCTATTCCTGTCTGTATAAAGTGTTTCATTATGAC1350.12788208324649983No Hit
TCGTGCTGGGGTGTTCACCTATTGAAAATTAAAAATACATTTTGTTTATGGA1340.126934808555785No Hit
GTAGTAGGGCAGGCATGAGCCATCACATCTGGCCCAAATAACAATTTTTGAC1340.126934808555785No Hit
TAGTCAGGGGGTATTTCTATTCTTTAAATAAAATGCAAGTTGACATCTTGAA1330.1259875338650702No Hit
AAATGTGGGTGGAAAACACATGGATGTTGTTTAGTGAAGTTGAACATGTACG1300.12314570979292576No Hit
CATATGGGGAAAAATCCAATATTTGTAAGCATTCACTGGATGTGTTCAGCAT1280.12125116041149613No Hit
TGCTTTGGGAAGTGGGTGCTGGGCTGGTATGGGAGCCCCGGGTCCCTGGAGC1270.12030388572078132No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAAACTCGTATGC1260.11935661103006649No Hit
TTGCACGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1240.11746206164863689No Hit
TACCACGGGGTTGCCAGCTTGCATCTGCCATCATTTGATGCCCACCTTACAG1240.11746206164863689No Hit
AATAGGGTGAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAA1220.11556751226720725No Hit
CGTACAGGGGAGATTCTGAATTGTTAAGTATAGAAATCAATTTGATTTTTGT1210.11462023757649244No Hit
AAGCATGGGGACAGCAGCTCTACCCCTCACGACGCAAACATGGCAGCGCAGA1160.10988386412291837No Hit
TCCAGCAGGGCCTTACAGATATTTTTCTCCAGAAGATGGTGCTGGGTAATAA1150.10893658943220356No Hit
TTGCAGAGGGATGTCTTGACTGTTAGTTGTCCACAAATCTTCAGTATTTTCT1150.10893658943220356No Hit
ACTCCTGGGACTACTGATTTTATTAAATCAGAGTCTTTAATTCTTGCATGTT1150.10893658943220356No Hit
CCATTAGGGCCAGTGGTTACCTATCACAATTAACAAAGAAATCCAAGCTCTT1130.10704204005077393No Hit
TTGTACGGGAATGAACATTCATGTAGTCTTTACCTAAACTCACCATTAACAT1120.10609476536005912No Hit
ACTTCTGGGGTGATTGTCTATCAGCATCTTAAAAAAGTTTCTATAATTTGTT1120.10609476536005912No Hit
TTTTTAGGGAGACTTCAGTGATGGGGTGTGTTCAAGGAGCGCAAGGATGGTA1110.1051474906693443No Hit
TAGCCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1100.10420021597862948No Hit
AGTTTGGGGGTCTCGCTCCGGGGCGGAAAGTGGGTCAGGGCCGGGCCGGCGG1090.10325294128791468No Hit
CCGTTAGGGCTGGAAAATTTGTTGAATGTACTGAGCAATTAGAATTGTTACC1090.10325294128791468No Hit
ACTTCAGGGGGCGGCTGGGAGCGGGTGGGCGGCCGGGAGGCCGGAGCAGCAC1090.10325294128791468No Hit
TGTAGCGGGATGGCAGGAACCGGCCCAGCCATGTCTGGCTCTGTGACCTGCC1090.10325294128791468No Hit
CTACCTAAGGGTACTAGACTGTGGATATTTCCATATGTTGACAGGATGTGGT1080.10230566659719985No Hit
TTTATAGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGG1080.10230566659719985No Hit
ATCCCAAGGACAGAGGGGAAGGAATCTCAACACCAGAAGGAATGAAAATGTA1070.10135839190648505No Hit
TAGGAAGGGATTTGCAGCAGTTGCAGTTGCGAGGATTCTGCATTTAGGTGCC1070.10135839190648505No Hit
GCGTATGGGATCAAAATCCTGGAAAAACTAAATGGAAATGGAAGATGGAAGT1070.10135839190648505No Hit
GTTGCTGGGAATTGCCCTGACCACATTTGCCTTTCAGTAGGAGGAGGCTGTG1060.10041111721577024No Hit
GCTCGGGCACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGC1060.10041111721577024No Hit
TGGGTATGGGGAAATTATGCTATTGCTGATTTATTTTTTTTCAACTTTTTAA1060.10041111721577024No Hit
AAATATTGGGGCTCTTCCGATCTAACAACGGGAAAAAAAGAGCAAAGGAAAC1060.10041111721577024No Hit
CATCTTGGGAATGTGGTAATTCTGGAAATTAGGTAGTATCCCTTCCTCAGGG1060.10041111721577024No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)