FastQCFastQC Report
Sat 31 Dec 2022
SRR5848773.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848773.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115361
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT11921.033278144260192No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC11360.9847348757379011No Hit
GATGCCGGGAGTACATAATATGTATTTCCATTTGTCCAGATCTACTTTTGTG1710.14823033780913827No Hit
GGTTCCGGATTATCTGTTAGTTTGAAAGCAGACAAGTAAATCCCACCTTTGA1600.13869505292083115No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCCTGTCTCTTATAC1570.13609452067856556No Hit
ACCATAGGGCTTCATAACACTGTACCAATTCAGCTTTTAAATTTTATTACTT1510.13089345619403436No Hit
AAACAAGGGATGATTATTTGAAATACACTTGTGTTAGTAACTGCTTCTATAA1480.1282929239517688No Hit
CGCAAAGGGAGGTTATGATGTTATCATCAGTCCCAGTGCTATCAGTCAACTC1480.1282929239517688No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGA1380.11962448314421685No Hit
AATGTGGGGGGTGGTTGTGTGGTCGCGTCTCGAAAACCGGTAGCGCTTGCAG1380.11962448314421685No Hit
TACGCTAGGGATCAGCCTCCACCTGGAAGAGAGCTAGGGCCGGGCAGGCCGG1350.11702395090195128No Hit
GTTGGCGGGAATGCTAAGTAAGGCAGCAGTCATTTGTGTATTCAGGCTTTTA1300.1126897304981753No Hit
GGATTCGGGGTACTTGTGCCCTAAAACCTTCCTGTTGAGAATCCCTAATATC1290.1118228864174201No Hit
GCTCACGGGTATGGCCACAAATATGACTTTACGTCCAGTCGGCATACAGTGG1290.1118228864174201No Hit
CTATATGGGGAGTTGCTTCAGCGTCCCGGTGTGGCTGTGCCGTTGGTCCTGT1290.1118228864174201No Hit
TTTCTAGGGAGGCTCCTCCCTGCTTAGGGTCTCATTTCTCTGAAAAGAGGAT1260.10922235417515451No Hit
TAACAAGGGAATCTCTTTCCATCTTACTTGCCCTTCTATACTTTCTCACATG1250.10835551009439931No Hit
GCATAGGGGTCTTGCGAAGGGGTATCACATCTAGAGAAAATAATTTTGGGTG1240.10748866601364414No Hit
TTCATTGGGCTGTGAAGGCTTTTTAATCCATGATCTGGCTATAAACTAACAG1220.10575497785213372No Hit
GTAAATGGGCTTATTAATCTCAGCAGTTAGCATGTTATGTTTTTCCATTGTC1210.10488813377137855No Hit
TATCATGGGTCCAAGTAGCTTATTTTTCCCTTTAAATCTCATTGTAAATATA1200.10402128969062335No Hit
GGCGTAGGGAACAATGAAGTTTGCTGCATCCATGTACTCTTCTTTCCATGAA1200.10402128969062335No Hit
GATCATGGGACAAACTTCTTTCACCATCACAAAGGACAAACACATCCTCTTG1190.10315444560986815No Hit
CAGCCAGGGACTGAGGTGAGGTTATGAAACTTTCATTGGTCCCATCGTTGTG1180.10228760152911295No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)