FastQCFastQC Report
Sat 31 Dec 2022
SRR5848772.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848772.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112392
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT11251.0009609224855862No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC11210.9974019503167486No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCCTGTCTCTTATAC1680.14947683109118087No Hit
AAACAAGGGATGATTATTTGAAATACACTTGTGTTAGTAACTGCTTCTATAA1530.13613068545803972No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAAACTCGTATGC1460.12990248416257386No Hit
TACGCTAGGGATCAGCCTCCACCTGGAAGAGAGCTAGGGCCGGGCAGGCCGG1460.12990248416257386No Hit
GGTTCCGGATTATCTGTTAGTTTGAAAGCAGACAAGTAAATCCCACCTTTGA1430.12723325503594562No Hit
GCATAGGGGTCTTGCGAAGGGGTATCACATCTAGAGAAAATAATTTTGGGTG1420.12634351199373622No Hit
ACCATAGGGCTTCATAACACTGTACCAATTCAGCTTTTAAATTTTATTACTT1370.12189479678268915No Hit
GATGCCGGGAGTACATAATATGTATTTCCATTTGTCCAGATCTACTTTTGTG1360.12100505374047976No Hit
CGCAAAGGGAGGTTATGATGTTATCATCAGTCCCAGTGCTATCAGTCAACTC1310.11655633852943269No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGA1270.11299736636059506No Hit
CATACAGGGAGCTGTTAATGCCTACAATAAAAAGAAAGCTCTCAAATCAGTA1230.10943839419175744No Hit
GGACGGGTAAACTGTAAAGTATATTTTACTGGTGTTTTCTTCCTTATTCCTA1230.10943839419175744No Hit
TACACTGGGTATAGTAATTTTAAAACAGCTTAGAGTTGGCAAAAACAAAACA1220.10854865114954802No Hit
ATGCCAGGGTGGGAGGTATGCCCAACAGCTCATTGAGAACGGGCCATGATGA1170.10409993593850095No Hit
AATGTGGGGGGTGGTTGTGTGGTCGCGTCTCGAAAACCGGTAGCGCTTGCAG1170.10409993593850095No Hit
GTAGTAGGGATCCTGGGCTATTGGACTCTCTGTAGCAGATTTGGCAGAGAGT1170.10409993593850095No Hit
CTTGGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1160.10321019289629156No Hit
TAACAAGGGAATCTCTTTCCATCTTACTTGCCCTTCTATACTTTCTCACATG1160.10321019289629156No Hit
CGGCGAGGGGGTAAAATGTGATGAAGATGGATTTCACAAATAGACAAAAAAG1150.10232044985408215No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCCTGTCTCT1150.10232044985408215No Hit
TATCATGGGTCCAAGTAGCTTATTTTTCCCTTTAAATCTCATTGTAAATATA1140.10143070681187273No Hit
TGCGGAGGGGCAAGGACCTGGAGCACTCCGCCGAACTGGCCCGCGAGGGCTG1130.10054096376966332No Hit
TCCAATGGGTATGGTCACCCCCACTATCCCCATGACCGCATGAAGAGGCAGT1130.10054096376966332No Hit
TCACAGGGGTAGGTCAATATACAAAAATCAGTTCTATTTCCATATGTGAGCA1130.10054096376966332No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)