FastQCFastQC Report
Sat 31 Dec 2022
SRR5848771.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848771.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99889
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT8000.8008889867753206No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC6930.6937700847941214No Hit
GAATTTGGGACATGAAAATAAATTAGACTGCGACAATGATAACAAACCAGGC2060.20622891409464503No Hit
AAGCATGGGACACCGAAGAACGGCCGCGTGCCTGCTTGAATTTCTTGAAACT1940.19421557929301525No Hit
TAAAAGGGTCTGGCTGCTGATTGTACAGCAGGCACTGGCTTTCCACAGCCCT1520.1521689074873109No Hit
ATTTCCGGGCTTCATTTTGGTCTTCTGGCCGCTAGAGCTATGAGAAAATACA1510.15116779625384175No Hit
GTAGCCGGGATGCAAATTTTTCCAAGAGGTTATGTCTCAAGTTTCTATTCTA1440.1441600176195577No Hit
TTGATTGGGAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAATAAG1390.13915446145221197No Hit
CTTGGTGCGGGAAGTCAAGGTCTTGGGAAAGCTTAGCAAAATGGTGCAAGTC1390.13915446145221197No Hit
CTTTGTGGGATATAGATTAGATCTCAGTATTTAAACTGTTCCTCAATTTTGT1380.1381533502187428No Hit
ACATATGGGAGAGTGGAGCGGCCGCCGGAGATGCCTGACGCATCTGTCTGAG1370.13715223898527365No Hit
TTTCGGCGGGAAATCATGGGACTGCACCTTAAATAGTCTCAAGTGTTTGGGA1360.1361511277518045No Hit
GTATAGGGGAGATGCACTTAGGGCTCTTTGGAGATCAGAAATGTATATGGAG1360.1361511277518045No Hit
AAATTTGGGCATACAATGTGAGCTGAAAATTGGTTCTGAAGAGTTTGAAGAA1340.1341489052848662No Hit
GCTGCCGGGAACTGGTAAATGTGTTTCCATGAGTTCTGTGAGCTGCTCTAGC1340.1341489052848662No Hit
TAACTTGGGGACAATTTAATAATTTAAAAACAAGACATCTCCAGGTAGGAAA1340.1341489052848662No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGA1310.13114557158445875No Hit
ATTTGTGGGGATTTCTGCAATGAACCCAAACTTTTAGAGTAAAAAGCCAAAT1300.13014446035098962No Hit
TGCCTTGGGAACTTAAATGGTTTTTTACAGGAGTTAAAGTACATAAATGCCT1290.12914334911752046No Hit
ATTAGGGGCATCAGTTTTATAACATCTGAAGCAAGTGAAAGGTGCCATCAAG1290.12914334911752046No Hit
TCGCAAGGGCTTTTCGAAGGGTAAGTAGGAAGAATATCTTGACCTGTTTTTG1290.12914334911752046No Hit
AAATTAGGGATGGGAGATGCTGATTGTAGGGTCTGAGTTAGATACTGTTAAC1270.12714112665058214No Hit
AGTGGCGGGATCCAGATTGAGAGCCAGGATCCTGGAGGGGCAAACTCCAGGC1270.12714112665058214No Hit
CAACCAGGGATTATCCTCTTAACTAATCATTGCTTGCCCATGAAATTCCAAA1270.12714112665058214No Hit
GGCAACGGGCTCTTGATTGAATGCCCATAGGTAATTGGAAATTCTTTATTAC1260.126140015417113No Hit
ATAATGGGGCAGGGCTGAAATGTTTACACTGCATTTTAAAAAATTTTATAAA1260.126140015417113No Hit
GCAATTGGGCTGTGTGACCCTGGGCACAATTTCTCCTTCCTCTGGAAACCTC1260.126140015417113No Hit
TACACTGGGAGAAAATAAAAGTGCTTGAATCAAATACCTTATCAGAAAAAGT1240.1241377929501747No Hit
TACTTTGGGACTTTTAAAAAATTTTGGTAAAATATACTCAGTGTAAAAATGT1240.1241377929501747No Hit
TCGTCTGGGATTTTGCATGGACTGAAGGCTTCTGTAGCTGTTTTCCTACGAA1230.12313668171670554No Hit
TTGTCTGGGATGCCAGCTAAACTCACTCACGCCGGCTAAACTCACTCGTACC1230.12313668171670554No Hit
CTTTCCGGGCATGATGTAATGTCTACAAACACAGCACACTTTGAAGTTTAAT1230.12313668171670554No Hit
ATGTACGGGTGACGCTGGACAGCTTCGATGCCATGTTCCGAGAGGCCAATCA1220.12213557048323638No Hit
TGAGCGGGGCTAAATACACATTTGATTTCTCAGAAGAAGAGGATGATGATGC1220.12213557048323638No Hit
GGTGTAGGGGGTGGGTCAAAAGTGCCGGTCAAAATGGAAGTGAATCCCCCTA1220.12213557048323638No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCCTGTCTCTTATAC1210.12113445924976725No Hit
ACCACTGGGCATGTTCCAGCCCTTCCTTGAGATGATACACGAGGCTCAGCAG1210.12113445924976725No Hit
ATGACCGGGAGCCTGAGCCACGGCCGCGTCGTCTACAGCCCCGGGGAGCCGT1200.12013334801629809No Hit
TATTAGGGGGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTG1190.11913223678282894No Hit
GCTTTGGGGATGGATGGGGACCTGGGACTGATCTCAGGCTGGGGCCGAACAG1180.11813112554935978No Hit
TCAATCGGGTTACAAATGGCATGACATTTAAAATTTTTGACCCATTCGCAAC1180.11813112554935978No Hit
CATTCAGGGAAGTGTTAATGACATTTTCATTAATGGATGAAAACTTCAGGGC1180.11813112554935978No Hit
ATTTCAGGGGAGTCTGAGGCAGGTGCCCGACATGGCGAGTGTAGTGCTGCCG1160.11612890308242149No Hit
ATGCAGGGGAGCAACACCTGGCCAGGCAGTTTAAGGCGATAAAAGCGAAAAT1160.11612890308242149No Hit
ATGTGCGGGAGGGAAGGAAAGGCTCCGCCATTTGGGAAAGTGGTTTCTACGT1160.11612890308242149No Hit
AGCACAGGGCCTGGATTGCATCATCAGAGAAAATACACCCAGTCATTTTGCG1160.11612890308242149No Hit
AACATGGGGGGGCTGTCTATGGGGTTTGTCTGACATCCTCAAAGGCTGCCTC1150.11512779184895235No Hit
GCGTCGGGGTTGCTGGCATTGAATTAACACAGGGACAAAATTTGGTTAATTT1140.11412668061548319No Hit
AGTTCTGGGGATCTTGAAACGGGCCACTAATGCTTTTAATAACTTACATAGA1140.11412668061548319No Hit
AAGCTGGGGCTGCTCTCGGGGATCTAGAAGCGGGACTGGTCTCTCAGGGTGC1140.11412668061548319No Hit
CTCTCTGGGGAACCAAAACAGAAATGAAGCCTTTACGTGTCAAAGATAGGGC1130.11312556938201403No Hit
TTTGGTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1130.11312556938201403No Hit
GTCAACGGGATAAATTTTAAAAGAAAACTTAAAAATACAGTAGCTGCTTCTA1130.11312556938201403No Hit
TAGTGGGGATTGTCCCAGATAGTGTGCGTAAGTGCTCTTTGTTGAGCTAATG1130.11312556938201403No Hit
TACTTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1120.11212445814854488No Hit
GGTATCGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC1120.11212445814854488No Hit
ATTTAAGGGGAGATCATCGAGGCTATCTACAAAATGGTAGGCACTGTGATCA1110.11112334691507574No Hit
AATTACGGGAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAAC1100.11012223568160659No Hit
GTCGGCGGGCATTTCACTGCTGAGTACCTTGTCTCCTGTAGTTGTTAACACT1100.11012223568160659No Hit
TAACAAGGGGTGGGTGTGGGAGTACGAGACGGAGGAAGGAGCACACGACCTC1100.11012223568160659No Hit
CAGCAGGGAATGCCCGCCAGCACAGTGGCGGCAACATTGAAGACGTGGACGG1100.11012223568160659No Hit
TGAAGCGGGATATTTGGACCAAATCCAAATCACTGAGTGATTCTACTAAATG1100.11012223568160659No Hit
GCAATTGGGTGGGCTTTCAGCCAGGTGTTCTGGGTTACTACCAACCTGGGAA1090.10912112444813743No Hit
AACGTAGGGATAAATGATATGCTTGCTTATTTGTTAATCAAGGAATATAGAA1090.10912112444813743No Hit
CGCTTGGGCAAATGACTATGTTACCTGTGCTGTCCATCATGAGTTACATATT1090.10912112444813743No Hit
CTGCTAGGGAAACAACCACAACCTCGTTGGTGCTGCAACGAGCTGGTGGAGC1090.10912112444813743No Hit
TAATGCAGGGGGCATGTGCTCAAAACCTATGAGATATTATCATTCCTGATAA1090.10912112444813743No Hit
ACTATAGGGTCTAAAACTTACTGAGCATTTATTATATGCCAGGCATTCTGCT1090.10912112444813743No Hit
CCAAATGGGCTATTCTAAAAATAGGAATATTGGTGTCTTTTATTATTTTTAG1090.10912112444813743No Hit
TGCTTTGTTGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCCACCTCCCAGATT1080.10812001321466827No Hit
GAACCTGGGACCTGCCGGTGATATCGTCTCCTTCTGAGATCTGAGGACATGG1080.10812001321466827No Hit
CTTATTGGGACCTTCTGGATGAAGTAATTTTACTAATTTATTCCATGCAAAA1070.10711890198119914No Hit
AGCGTTGGGCGTGTTTTAAATTAAATTGAGTTAAAATTATAATTGCATGAAG1070.10711890198119914No Hit
TTGACAGGGATGAGAGGGTTCGTGCACCTGTGAGAATCTAATGCCATCTCTG1060.10611779074772998No Hit
TTTGCTGGGGAAAACAATGTAAAGCTACACAATTAAAATAGTGTGGCATTAT1060.10611779074772998No Hit
AAGTAAGGGGAGTTAGTTAAACGGTATCAAGAAAAATGGGACAAATTGCTTT1060.10611779074772998No Hit
GACGCAGGCAGGAGCAAGCAGCCGTGGACCCCTAAGCCGAGCTGGTGGAAGG1060.10611779074772998No Hit
TGCTCGGGGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTCGCC1050.10511667951426083No Hit
TTTGCTGGGAGAAAATAAAAAATAAAACTTCCCTCATTGTTTTTGTTGTCAG1050.10511667951426083No Hit
GATTGTGGGCAAGCTGCTTCTTGACATTAGGTGTAGCATGTCTACTTTTAAG1050.10511667951426083No Hit
TTTGGTGGGGTAACACATGAGAGCCCTCATGTTTCTGGAAGTGTTTAAAAGG1050.10511667951426083No Hit
GTCTAGGGCGATACTGCATTTGTAATCAGGTATCTTATGGTGAGATGGTGGG1050.10511667951426083No Hit
CAGCATGGGCAACTCCATATTTACCAGCTGAAGACGCTCATCAAGATTGTGA1050.10511667951426083No Hit
GTGCCAGGGCAGGAGGGAGCAAGAGGAGGAAAACCCAGTTCTTCCTTCATCC1050.10511667951426083No Hit
AAAAAAGGGAATGATCAAGTGTTACTTATCTAATAATCCTCTAGAAAGAACC1050.10511667951426083No Hit
GAACAGGGGCGGTGAGTTATCACAGAAATAATGTTGCAGTTATGGTTATAGC1050.10511667951426083No Hit
TTAACCGGGCCTCTTTGCAACCGGGTCAGAATGGCGGCAGTGGAGCATCGTC1050.10511667951426083No Hit
GCTGGCGGGATATAAAGTAAGTAAAGTATATAAATAAAGGGAAATTCAGATG1040.10411556828079167No Hit
GTCTTAGGGCTCAAAGAGTGGAAGAGTGGAAGTGCGAAGGAATCTCAGGTAG1040.10411556828079167No Hit
CATTGCGGGACAGATGTGCGCTACCATGCCCAGCTGATTTTTGGAAATTTTA1040.10411556828079167No Hit
AGAGCCGGGTCTGTAGGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCT1030.10311445704732251No Hit
TTACAAGGGATTCCTGTGTAGCATGTTAACAGGTGCTTACCACCCTTAGAGA1030.10311445704732251No Hit
GTGGGCGGGAGGCTGCCGAGTGGCCATCGCAGCCCTTGAGGTTTTAGAAGAA1030.10311445704732251No Hit
CTGGACGGGGTGGGCTTTGAATCATACCTTTACCATTTACTAGCTGTGTGAT1030.10311445704732251No Hit
TAATATGGGCTGTTAAAATGAAAGCACAAAGTATCAAAACGTATAGGATGCA1030.10311445704732251No Hit
ACGCCAGGGTGTTCCCTGCAGCCCTCCCACGGGAATGACAATGGATAAAAGT1030.10311445704732251No Hit
TCGTAGGGTAGGCTCATATTTTAAATATCACTTTATAACATTTTTGAAATAA1020.10211334581385338No Hit
ACCTCAGGGGAATGATTGAAGATGGGATTAACTAATGCAAGTTTACAGTTGC1020.10211334581385338No Hit
TTACAGAGGGATTTAAAGGTTGTGGGTTCTTACCTTGGCAAGAGTGTGCCAT1020.10211334581385338No Hit
GGTGTAGGGCTGGAGGATAATGAAAAGTCCGTGTTTTGAAGTTTTCAGATTA1020.10211334581385338No Hit
GGGTACGGGACAAATAAAGTTGCTGTAAATATTCACATACAAATCCATTTAT1020.10211334581385338No Hit
CTATTAGGGGTAGAACCGGGAGTGGACACCCACAGACGCCCAGGCTGGATGC1020.10211334581385338No Hit
CGTGATGGGAGACAGTGGGATTTTTATGCTGCCAGCAGAAAGGTCTTTTCAT1020.10211334581385338No Hit
TCGCTAGGGGAGCTTGAATATTTTTCTTAACATAAGAGCACATCAGTGATTC1020.10211334581385338No Hit
ATGGCCGGGTGACTGGTTTCTGGTGAGGTCTCTATTCATCAGTGGGAGCTGA1010.10111223458038424No Hit
TCGCTTGGGTCCGATCTTTCTGTGGGATGTGGACTTCTGGTCTGCCCAGAGA1010.10111223458038424No Hit
ACCGCTGGGACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCTCT1010.10111223458038424No Hit
ATATATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1010.10111223458038424No Hit
GGCATTGGGTTCTAGACTTCTTAACAGAAAAAACAGTTTGGGTTCAATAGCA1000.10011112334691508No Hit
GCACTTGGGCCCAAAGGGCCGGGATTACAGGCGTGAGCCACCGCGCCCGGCC1000.10011112334691508No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)