FastQCFastQC Report
Sat 31 Dec 2022
SRR5848770.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848770.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99894
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT8250.8258754279536309No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC6790.679720503733958No Hit
GAATTTGGGACATGAAAATAAATTAGACTGCGACAATGATAACAAACCAGGC2190.21923238632950928No Hit
AAGCATGGGACACCGAAGAACGGCCGCGTGCCTGCTTGAATTTCTTGAAACT1830.1831941858369872No Hit
GTAGCCGGGATGCAAATTTTTCCAAGAGGTTATGTCTCAAGTTTCTATTCTA1690.1691793300898953No Hit
TCGCAAGGGCTTTTCGAAGGGTAAGTAGGAAGAATATCTTGACCTGTTTTTG1680.168178268965103No Hit
TTTGCTGGGAGAAAATAAAAAATAAAACTTCCCTCATTGTTTTTGTTGTCAG1520.15216129096842654No Hit
TAAAAGGGTCTGGCTGCTGATTGTACAGCAGGCACTGGCTTTCCACAGCCCT1430.14315174084529603No Hit
GCTGCCGGGAACTGGTAAATGTGTTTCCATGAGTTCTGTGAGCTGCTCTAGC1420.14215067972050374No Hit
CAACCAGGGATTATCCTCTTAACTAATCATTGCTTGCCCATGAAATTCCAAA1400.14014855747091917No Hit
GCTGGCGGGATATAAAGTAAGTAAAGTATATAAATAAAGGGAAATTCAGATG1390.1391474963461269No Hit
TATGACGGGAAGTATAATTCAAAAGTAAAGAAGCTTAGAATATAAACAGGGA1380.13814643522133463No Hit
ATATATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1360.13614431297175006No Hit
TCAATCGGGTTACAAATGGCATGACATTTAAAATTTTTGACCCATTCGCAAC1320.13214006847258095No Hit
GCAATTGGGCTGTGTGACCCTGGGCACAATTTCTCCTTCCTCTGGAAACCTC1320.13214006847258095No Hit
ATTTCCGGGCTTCATTTTGGTCTTCTGGCCGCTAGAGCTATGAGAAAATACA1320.13214006847258095No Hit
CTATTAGGGGTAGAACCGGGAGTGGACACCCACAGACGCCCAGGCTGGATGC1320.13214006847258095No Hit
ATAATGGGGCAGGGCTGAAATGTTTACACTGCATTTTAAAAAATTTTATAAA1300.13013794622299638No Hit
TTTGGTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1280.12813582397341183No Hit
TACTTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1280.12813582397341183No Hit
TTGATTGGGAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAATAAG1280.12813582397341183No Hit
TGCTTTGTTGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCCACCTCCCAGATT1280.12813582397341183No Hit
ATTTAAGGGGAGATCATCGAGGCTATCTACAAAATGGTAGGCACTGTGATCA1280.12813582397341183No Hit
AGCACAGGGCCTGGATTGCATCATCAGAGAAAATACACCCAGTCATTTTGCG1270.12713476284861952No Hit
GAACCTGGGACCTGCCGGTGATATCGTCTCCTTCTGAGATCTGAGGACATGG1270.12713476284861952No Hit
TGAGCGGGGCTAAATACACATTTGATTTCTCAGAAGAAGAGGATGATGATGC1260.12613370172382726No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGA1250.12513264059903498No Hit
CAGCAGGGAATGCCCGCCAGCACAGTGGCGGCAACATTGAAGACGTGGACGG1250.12513264059903498No Hit
TAACTTGGGGACAATTTAATAATTTAAAAACAAGACATCTCCAGGTAGGAAA1250.12513264059903498No Hit
AGTTCTGGGGATCTTGAAACGGGCCACTAATGCTTTTAATAACTTACATAGA1240.1241315794742427No Hit
ACATATGGGAGAGTGGAGCGGCCGCCGGAGATGCCTGACGCATCTGTCTGAG1240.1241315794742427No Hit
TTGACAGGGATGAGAGGGTTCGTGCACCTGTGAGAATCTAATGCCATCTCTG1230.12313051834945041No Hit
ACAAGCGGGGAAGGGAAAGTAAAAACTGTGGTACATTGAAGTTCACATGACT1230.12313051834945041No Hit
GGCATTGGGTTCTAGACTTCTTAACAGAAAAAACAGTTTGGGTTCAATAGCA1220.12212945722465815No Hit
GTGCCAGGGCAGGAGGGAGCAAGAGGAGGAAAACCCAGTTCTTCCTTCATCC1220.12212945722465815No Hit
TTACAAGGGATTCCTGTGTAGCATGTTAACAGGTGCTTACCACCCTTAGAGA1210.12112839609986585No Hit
ATTTGTGGGGATTTCTGCAATGAACCCAAACTTTTAGAGTAAAAAGCCAAAT1210.12112839609986585No Hit
AAGCTGGGGCTGCTCTCGGGGATCTAGAAGCGGGACTGGTCTCTCAGGGTGC1210.12112839609986585No Hit
AGCGTTGGGCGTGTTTTAAATTAAATTGAGTTAAAATTATAATTGCATGAAG1210.12112839609986585No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCCTGTCTCTTATAC1200.12012733497507358No Hit
ACGCTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1200.12012733497507358No Hit
CGATATTTCAGATGGGCTTTTGATGCACTGTTGCCAAGGAAGGCTTTTTCTG1200.12012733497507358No Hit
TTACAGAGGGATTTAAAGGTTGTGGGTTCTTACCTTGGCAAGAGTGTGCCAT1200.12012733497507358No Hit
CTTGGTGCGGGAAGTCAAGGTCTTGGGAAAGCTTAGCAAAATGGTGCAAGTC1200.12012733497507358No Hit
ATGTACGGGTGACGCTGGACAGCTTCGATGCCATGTTCCGAGAGGCCAATCA1190.1191262738502813No Hit
ATGCAGGGGAGCAACACCTGGCCAGGCAGTTTAAGGCGATAAAAGCGAAAAT1190.1191262738502813No Hit
TTTGGTGGGGTAACACATGAGAGCCCTCATGTTTCTGGAAGTGTTTAAAAGG1190.1191262738502813No Hit
ATGTGCGGGAGGGAAGGAAAGGCTCCGCCATTTGGGAAAGTGGTTTCTACGT1190.1191262738502813No Hit
AACATGGGGGGGCTGTCTATGGGGTTTGTCTGACATCCTCAAAGGCTGCCTC1190.1191262738502813No Hit
TGCCTTGGGAACTTAAATGGTTTTTTACAGGAGTTAAAGTACATAAATGCCT1180.11812521272548902No Hit
AACAACGGGCGATCTGGCAGTTGGGAAGGCTGGGGAGCTGTGCTTTGGAAAA1180.11812521272548902No Hit
TTTCAGGGGCTGTGGGGCCAGGCACCAGGAACCAGCAGAGAACAAACAGATG1180.11812521272548902No Hit
GATTGTGGGCAAGCTGCTTCTTGACATTAGGTGTAGCATGTCTACTTTTAAG1180.11812521272548902No Hit
AAATTAGGGATGGGAGATGCTGATTGTAGGGTCTGAGTTAGATACTGTTAAC1180.11812521272548902No Hit
TAACAAGGGGTGGGTGTGGGAGTACGAGACGGAGGAAGGAGCACACGACCTC1180.11812521272548902No Hit
TACACTGGGAGAAAATAAAAGTGCTTGAATCAAATACCTTATCAGAAAAAGT1170.11712415160069674No Hit
GTATAGGGGAGATGCACTTAGGGCTCTTTGGAGATCAGAAATGTATATGGAG1170.11712415160069674No Hit
TCTCAAGGGCTACTGTTAGACTAGGCGACTCACATTTGAGGACTTTTCTCGG1170.11712415160069674No Hit
ACCACTGGGCATGTTCCAGCCCTTCCTTGAGATGATACACGAGGCTCAGCAG1170.11712415160069674No Hit
AGAGCCGGGTCTGTAGGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCT1160.11612309047590447No Hit
TTAGCTGGGAACAGGAAATCTGTTTATGTCTCTTTATTTGAAACCAGTTTTA1160.11612309047590447No Hit
TAGCTAGGGATTGCACAGAAGCTTTTAAAGCACTCTGTGACACTTTTTGTAA1160.11612309047590447No Hit
TACTTTGGGACTTTTAAAAAATTTTGGTAAAATATACTCAGTGTAAAAATGT1150.11512202935111218No Hit
CTTTGTGGGATATAGATTAGATCTCAGTATTTAAACTGTTCCTCAATTTTGT1150.11512202935111218No Hit
CTCGTTGGGCGGGCTATTTGTTTTGGTCAAAATAAAACTATTAAACATAAAC1140.11412096822631991No Hit
GGTATCGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC1140.11412096822631991No Hit
GCTTTGGGGATGGATGGGGACCTGGGACTGATCTCAGGCTGGGGCCGAACAG1130.11311990710152761No Hit
ATTTGGGGGCAGTGAAGGCTAGACCCGGTTTACTGGAATTGCTCTGGCGATC1130.11311990710152761No Hit
GTGATGGGGGCAGCCTCTGCGCGTCGCCCTCCACGGTTACCCCGGCTCTCCG1120.11211884597673535No Hit
AAATTTGGGCATACAATGTGAGCTGAAAATTGGTTCTGAAGAGTTTGAAGAA1110.11111778485194305No Hit
TTACCGGGAGATAATTCACACTGGAGAGAAACCATTTAAATGTGAGGAATGT1110.11111778485194305No Hit
CTTTCCGGGCATGATGTAATGTCTACAAACACAGCACACTTTGAAGTTTAAT1100.11011672372715078No Hit
AAATGCGGGCTTTCCCATCTTGCAAGATGGCGGGTGAAAAAGTTGAGAAGCC1090.1091156626023585No Hit
GCAATTGGGTGGGCTTTCAGCCAGGTGTTCTGGGTTACTACCAACCTGGGAA1080.10811460147756623No Hit
CTCGCGGGTATTTAACATTGTATAATATGACTTAGCAAAGAAAAGTCTTGAA1080.10811460147756623No Hit
ACCGCTGGGACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCTCT1080.10811460147756623No Hit
TTTGCTGGGGAAAACAATGTAAAGCTACACAATTAAAATAGTGTGGCATTAT1070.10711354035277394No Hit
GGTGTAGGGGGTGGGTCAAAAGTGCCGGTCAAAATGGAAGTGAATCCCCCTA1070.10711354035277394No Hit
TCGAGCGGGATATGATGACGAACATCACAGTACATTGGTATCTACAAGACAT1070.10711354035277394No Hit
TTCCAAGGGGTTTGCAGTCTTTCATACATTACGTGTGTTAGAGGCCCTTAAC1070.10711354035277394No Hit
TTCCAGGGGCTCTTCCGATCTCCCAACGGGATGTTGCATTTAGAATAGTACT1060.10611247922798164No Hit
CTCTCTGGGGAACCAAAACAGAAATGAAGCCTTTACGTGTCAAAGATAGGGC1060.10611247922798164No Hit
CGATATGGGGTTGAAGCAGCTGAAAGAAGCCCAAGTACAGTATCCTCTCCAG1060.10611247922798164No Hit
TCGTAGGGTAGGCTCATATTTTAAATATCACTTTATAACATTTTTGAAATAA1060.10611247922798164No Hit
ACTTATGGGAAGCACATATGGCTGGACAGCAAACATGGAGAGAATCATGAAA1060.10611247922798164No Hit
TCCACTGGGATTAGAAATTGGTGTTTGTGATAGCATTTTACTTGGGTTACTA1060.10611247922798164No Hit
TAGTGGGGATTGTCCCAGATAGTGTGCGTAAGTGCTCTTTGTTGAGCTAATG1060.10611247922798164No Hit
GCGTGCGGGCGATCTCGGTTGGGGATGGCCATTGTGGAAAATATAATCTGCC1060.10611247922798164No Hit
TAACACGGGGTTAACAGTCCAGACCTTTTTCACTACATCAACCACGGATGAT1060.10611247922798164No Hit
CTTTAAGCGGGGATGAAGTACTTCTTTTTGAGAGAGCTACTTTTCTGGTAAT1050.10511141810318939No Hit
GGCACGGGGATGCTCAAAGATATTATGTTATACTGGCTTTTCTGATGATATT1050.10511141810318939No Hit
AAATGGGGGATATCAAAAGAAAATGGTGGTAGTTAGGTTAAATGGAAGATGC1050.10511141810318939No Hit
TTTCGGCGGGAAATCATGGGACTGCACCTTAAATAGTCTCAAGTGTTTGGGA1050.10511141810318939No Hit
ACCTCAGGGGAATGATTGAAGATGGGATTAACTAATGCAAGTTTACAGTTGC1050.10511141810318939No Hit
CGCTTGGGCAAATGACTATGTTACCTGTGCTGTCCATCATGAGTTACATATT1050.10511141810318939No Hit
TTTGTTGGGCGGGTGTAGTTTAAAAAGCTCCACAGGGGAGCTCTTTCCTTTC1050.10511141810318939No Hit
CACTTGGGGAGCATTAGTTTTGACTATGAGCTTCCTGGCAGCCAGAGTGAAA1050.10511141810318939No Hit
GTAGTAGGGAATTCGATGAATGTAGCTAGTAATAATCACACATTTTTAACGT1050.10511141810318939No Hit
CTAGCTGGGCTAGATGATTTTGAAGAAATGATTATTCGTTCACCAGATCACT1040.10411035697839709No Hit
CAGTCAGGGGATGGTGTTTTTTGGAGTTTCCTTTCTCACAGTTTTCCATCTC1040.10411035697839709No Hit
AAGTAAGGGGAGTTAGTTAAACGGTATCAAGAAAAATGGGACAAATTGCTTT1040.10411035697839709No Hit
TCTCTAGGGAGGGCTCGTGTTTCTGGCCTATCAAATGCTAACAGGTATGGAA1040.10411035697839709No Hit
AAAAAAGGGAATGATCAAGTGTTACTTATCTAATAATCCTCTAGAAAGAACC1040.10411035697839709No Hit
TGAAGCGGGATATTTGGACCAAATCCAAATCACTGAGTGATTCTACTAAATG1040.10411035697839709No Hit
TGTATGGGATGGCAATTGCTGCCTTTCCTAAGATAGGATCATACAACTGATC1040.10411035697839709No Hit
ATGACCGGGAGCCTGAGCCACGGCCGCGTCGTCTACAGCCCCGGGGAGCCGT1040.10411035697839709No Hit
TTGTCTGGGATGCCAGCTAAACTCACTCACGCCGGCTAAACTCACTCGTACC1040.10411035697839709No Hit
TCAAAAGGGCTGTGTGTTCAGTGACATCATACATTCTGTATCTAGAAGTCTA1040.10411035697839709No Hit
TAATATGGGCTGTTAAAATGAAAGCACAAAGTATCAAAACGTATAGGATGCA1040.10411035697839709No Hit
GTCGGCGGGCATTTCACTGCTGAGTACCTTGTCTCCTGTAGTTGTTAACACT1030.10310929585360482No Hit
TGTTAGGGCGATCTTGCAGGGGGCAGAATCCTTAGGGGTGGGGTCCAGGCCT1030.10310929585360482No Hit
GTTTCTGGGCTTGACTGATGTCCTTGCCCGAAGTCTCCACTCAACTCCCCAC1030.10310929585360482No Hit
ATCGAAGGGATCGTGGCTGTGACTGGTGACGGTGTGAATGACTCTCCAGCTT1030.10310929585360482No Hit
AGTCCTGGGCGACTGTGTCATGACAAGGAAACTTACAAACTGCAACGCAGAG1030.10310929585360482No Hit
TTGCTTGGGCTGAGCATTGCACCGGAAGACCCTTTTGTTATGCATGAGGTCG1030.10310929585360482No Hit
TTTTAGGGATACTTTGGTTTATTAAGTGAGTTCAGTTTTGTGGGAAATAATT1030.10310929585360482No Hit
TCTTGGGGGGATCCTGGAATACATGACACAATGTACTTGTCCAAACTCATAG1030.10310929585360482No Hit
TCCCCAGGCTGAGACAGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTA1030.10310929585360482No Hit
GTCAACGGGATAAATTTTAAAAGAAAACTTAAAAATACAGTAGCTGCTTCTA1030.10310929585360482No Hit
TCGTCTGGGATTTTGCATGGACTGAAGGCTTCTGTAGCTGTTTTCCTACGAA1030.10310929585360482No Hit
ATGTATGGGTCTTCTATGAATTCTTCCATTTAATTCTTCCACGATTATCTTC1030.10310929585360482No Hit
TATCAGGGGGATCTGAGACGGGGAAGTAACCTGAGATTTAAAACTTGATGAA1030.10310929585360482No Hit
GGTGCCAGGGGTACCATGGCGGAGAAGACTCAAAAGAGTGTGAAGATTGCTC1020.10210823472881253No Hit
GGTGTAGGGCATCTCACTTGATTTCAATCATTTTTATTGTAGTTAACGAACT1020.10210823472881253No Hit
TAATATGGGCGATCTTCTTAAGGGACAGTGGTTCGAGATCAAGTTGTACAGG1020.10210823472881253No Hit
AGTTCAGGGCACACCAGCCTGGGCCACAGAGTGAGACCTTGTCTCAAAAAAT1020.10210823472881253No Hit
CAAGTGGGGATACACAAGCGTGTCAGGCTGTCAGTGTTTGGTGCACGCTGGG1010.10110717360402026No Hit
GCTGCTTAGGGTGGTGCCGAGCTGTCCATAGCTGCAGTGAAAGATGAAGAGC1010.10110717360402026No Hit
TCAACTGGGCTCTTGGCACTGTCAAATGGTACAGTTATTTCCGAAAACAGTT1010.10110717360402026No Hit
AAACAAGGGGAGTAGCAGCGGCAGCAGCAACAGCAGCAGCCCCTACTGAAGT1010.10110717360402026No Hit
GATAGGGAGTGGGCAACTGCTTGATACCCACCTTTTGTTTGTTGCTTTCCCT1010.10110717360402026No Hit
CACAGGGATCTAGTAGAGGGAGCTCTGACATTCCTGTGAAGCAGTAAAGATT1010.10110717360402026No Hit
CGTGATGGGAGACAGTGGGATTTTTATGCTGCCAGCAGAAAGGTCTTTTCAT1010.10110717360402026No Hit
TGAGTAAGGGGAACTGCTTTCCTTACCCACAAGGAAAAAGAAAGTATTGGTC1000.10010611247922797No Hit
TACGATGGGATAACGAGGCATGGAATTGCTGGACCATAGCGACTGTTTAAGT1000.10010611247922797No Hit
CACCCAGGCTGGAGTGCAGTGGTGTGATCTCCACTCACTGCAACCTCCACCT1000.10010611247922797No Hit
CTTAAAGGGCATTCCAGGGATTGATTCTCACCAGCGTTTCTGATGGAAAATG1000.10010611247922797No Hit
TGAATAGGGATGACAGTTTTATAAATAAATCACTGAAAGTTACACAGCCAGC1000.10010611247922797No Hit
GACGCAGGCAGGAGCAAGCAGCCGTGGACCCCTAAGCCGAGCTGGTGGAAGG1000.10010611247922797No Hit
GCTTATGGGACTAAGACAAAGCTTTAACAAAGTTTATAGAATACTGAAACTC1000.10010611247922797No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)