FastQCFastQC Report
Sat 31 Dec 2022
SRR5848769.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848769.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98819
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT8300.8399194486890172No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC6400.6476487315192423No Hit
GAATTTGGGACATGAAAATAAATTAGACTGCGACAATGATAACAAACCAGGC1780.18012730345378924No Hit
AAGCATGGGACACCGAAGAACGGCCGCGTGCCTGCTTGAATTTCTTGAAACT1720.17405559659579636No Hit
CAACCAGGGATTATCCTCTTAACTAATCATTGCTTGCCCATGAAATTCCAAA1440.1457209645918295No Hit
ACGCTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1430.1447090134488307No Hit
ATTTAAGGGGAGATCATCGAGGCTATCTACAAAATGGTAGGCACTGTGATCA1430.1447090134488307No Hit
TGCCTTGGGAACTTAAATGGTTTTTTACAGGAGTTAAAGTACATAAATGCCT1410.14268511116283306No Hit
TACTTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1350.13661340430484017No Hit
GTAGCCGGGATGCAAATTTTTCCAAGAGGTTATGTCTCAAGTTTCTATTCTA1320.1335775508758437No Hit
TGCTTTGTTGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCCACCTCCCAGATT1320.1335775508758437No Hit
ATAATGGGGCAGGGCTGAAATGTTTACACTGCATTTTAAAAAATTTTATAAA1320.1335775508758437No Hit
AAATTAGGGATGGGAGATGCTGATTGTAGGGTCTGAGTTAGATACTGTTAAC1300.13155364858984608No Hit
ACCACTGGGCATGTTCCAGCCCTTCCTTGAGATGATACACGAGGCTCAGCAG1290.13054169744684727No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGA1280.12952974630384845No Hit
CTTATTGGGACCTTCTGGATGAAGTAATTTTACTAATTTATTCCATGCAAAA1280.12952974630384845No Hit
GCTTTGGGGATGGATGGGGACCTGGGACTGATCTCAGGCTGGGGCCGAACAG1270.12851779516084963No Hit
GCAATTGGGCTGTGTGACCCTGGGCACAATTTCTCCTTCCTCTGGAAACCTC1270.12851779516084963No Hit
AGTTCTGGGGATCTTGAAACGGGCCACTAATGCTTTTAATAACTTACATAGA1260.1275058440178508No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCCTGTCTCTTATAC1250.12649389287485202No Hit
GCAATTGGGTGGGCTTTCAGCCAGGTGTTCTGGGTTACTACCAACCTGGGAA1250.12649389287485202No Hit
TAAAATGAGGGGAAAGAAGGAGATGAATAGAAGAAAGAAAATGGAAAGAAGG1250.12649389287485202No Hit
TCGTCTGGGATTTTGCATGGACTGAAGGCTTCTGTAGCTGTTTTCCTACGAA1250.12649389287485202No Hit
TTTGCTGGGAGAAAATAAAAAATAAAACTTCCCTCATTGTTTTTGTTGTCAG1240.12548194173185317No Hit
GCTGCCGGGAACTGGTAAATGTGTTTCCATGAGTTCTGTGAGCTGCTCTAGC1240.12548194173185317No Hit
TAAAAGGGTCTGGCTGCTGATTGTACAGCAGGCACTGGCTTTCCACAGCCCT1230.12446999058885438No Hit
TTGATTGGGAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAATAAG1230.12446999058885438No Hit
ATGGCCGGGTGACTGGTTTCTGGTGAGGTCTCTATTCATCAGTGGGAGCTGA1230.12446999058885438No Hit
AGAGCCGGGTCTGTAGGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCT1230.12446999058885438No Hit
TCGCAAGGGCTTTTCGAAGGGTAAGTAGGAAGAATATCTTGACCTGTTTTTG1230.12446999058885438No Hit
TAACACGGGGTTAACAGTCCAGACCTTTTTCACTACATCAACCACGGATGAT1230.12446999058885438No Hit
GATTGTGGGCAAGCTGCTTCTTGACATTAGGTGTAGCATGTCTACTTTTAAG1220.12345803944585555No Hit
TAGTGGGGATTGTCCCAGATAGTGTGCGTAAGTGCTCTTTGTTGAGCTAATG1220.12345803944585555No Hit
TCTCTAGGGAGGGCTCGTGTTTCTGGCCTATCAAATGCTAACAGGTATGGAA1210.12244608830285673No Hit
ATTTGTGGGGATTTCTGCAATGAACCCAAACTTTTAGAGTAAAAAGCCAAAT1210.12244608830285673No Hit
TCTCAAGGGCTACTGTTAGACTAGGCGACTCACATTTGAGGACTTTTCTCGG1200.12143413715985793No Hit
AAAAAAGGGAATGATCAAGTGTTACTTATCTAATAATCCTCTAGAAAGAACC1200.12143413715985793No Hit
TGAAGCGGGATATTTGGACCAAATCCAAATCACTGAGTGATTCTACTAAATG1200.12143413715985793No Hit
CATTCAGGGAAGTGTTAATGACATTTTCATTAATGGATGAAAACTTCAGGGC1190.1204221860168591No Hit
GCTGGCGGGATATAAAGTAAGTAAAGTATATAAATAAAGGGAAATTCAGATG1180.1194102348738603No Hit
GGTGTAGGGGGTGGGTCAAAAGTGCCGGTCAAAATGGAAGTGAATCCCCCTA1180.1194102348738603No Hit
CTATTAGGGGTAGAACCGGGAGTGGACACCCACAGACGCCCAGGCTGGATGC1180.1194102348738603No Hit
TATGACGGGAAGTATAATTCAAAAGTAAAGAAGCTTAGAATATAAACAGGGA1170.11839828373086146No Hit
TTGACAGGGATGAGAGGGTTCGTGCACCTGTGAGAATCTAATGCCATCTCTG1170.11839828373086146No Hit
CTCGCGGGTATTTAACATTGTATAATATGACTTAGCAAAGAAAAGTCTTGAA1170.11839828373086146No Hit
GTTTCTGGGCTTGACTGATGTCCTTGCCCGAAGTCTCCACTCAACTCCCCAC1160.11738633258786266No Hit
TACTTTGGGACTTTTAAAAAATTTTGGTAAAATATACTCAGTGTAAAAATGT1160.11738633258786266No Hit
AGCGTTGGGCGTGTTTTAAATTAAATTGAGTTAAAATTATAATTGCATGAAG1160.11738633258786266No Hit
AAATTTGGGCATACAATGTGAGCTGAAAATTGGTTCTGAAGAGTTTGAAGAA1150.11637438144486384No Hit
CAGCAGGGAATGCCCGCCAGCACAGTGGCGGCAACATTGAAGACGTGGACGG1150.11637438144486384No Hit
CAAGTGGGGATACACAAGCGTGTCAGGCTGTCAGTGTTTGGTGCACGCTGGG1130.1143504791588662No Hit
TTTCGGCGGGAAATCATGGGACTGCACCTTAAATAGTCTCAAGTGTTTGGGA1130.1143504791588662No Hit
ACTTATGGGAAGCACATATGGCTGGACAGCAAACATGGAGAGAATCATGAAA1130.1143504791588662No Hit
TTGCGAGGGATAATGCAAAAGTCAAGAAAGTAGCAGCTAAAAATTAAGAAAT1120.1133385280158674No Hit
ATAACGGGCGAGATTGCATCACTGCACTCCAGCCTGAGTGACAGAGTGATAC1120.1133385280158674No Hit
CTCGTTGGGCGGGCTATTTGTTTTGGTCAAAATAAAACTATTAAACATAAAC1120.1133385280158674No Hit
ATGCAGGGGAGCAACACCTGGCCAGGCAGTTTAAGGCGATAAAAGCGAAAAT1120.1133385280158674No Hit
CTTAAAGGGCATTCCAGGGATTGATTCTCACCAGCGTTTCTGATGGAAAATG1120.1133385280158674No Hit
ATTTCCGGGCTTCATTTTGGTCTTCTGGCCGCTAGAGCTATGAGAAAATACA1110.11232657687286858No Hit
ACGCTTGGGGAGGTTGCTTTGTCTCCAAGGAAGTAACCAGGGACAACTTGAG1110.11232657687286858No Hit
TTCAATGGGATTACTGATTTTAAAGGTTCTGTTTTCAGGCATATAACATTTC1100.11131462572986978No Hit
AGCACAGGGCCTGGATTGCATCATCAGAGAAAATACACCCAGTCATTTTGCG1100.11131462572986978No Hit
AACATGGGGGGGCTGTCTATGGGGTTTGTCTGACATCCTCAAAGGCTGCCTC1090.11030267458687094No Hit
GTCGGCGGGCATTTCACTGCTGAGTACCTTGTCTCCTGTAGTTGTTAACACT1080.10929072344387213No Hit
GGCACGGGGATGCTCAAAGATATTATGTTATACTGGCTTTTCTGATGATATT1080.10929072344387213No Hit
TTACAGAGGGATTTAAAGGTTGTGGGTTCTTACCTTGGCAAGAGTGTGCCAT1080.10929072344387213No Hit
ATGGCTGGGCGGACCGGCCGCCTGCTTACTGACTACCGGGGCCACACGGCTG1080.10929072344387213No Hit
CTCTCTGGGGAACCAAAACAGAAATGAAGCCTTTACGTGTCAAAGATAGGGC1070.10827877230087332No Hit
ATGTGCGGGAGGGAAGGAAAGGCTCCGCCATTTGGGAAAGTGGTTTCTACGT1070.10827877230087332No Hit
GAAAAGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1070.10827877230087332No Hit
TTGTCTGGGATGCCAGCTAAACTCACTCACGCCGGCTAAACTCACTCGTACC1070.10827877230087332No Hit
ATTTGGGGGCAGTGAAGGCTAGACCCGGTTTACTGGAATTGCTCTGGCGATC1070.10827877230087332No Hit
TTTGGTGGGGTAACACATGAGAGCCCTCATGTTTCTGGAAGTGTTTAAAAGG1060.10726682115787449No Hit
CGATATTTCAGATGGGCTTTTGATGCACTGTTGCCAAGGAAGGCTTTTTCTG1060.10726682115787449No Hit
CACAGGGATCTAGTAGAGGGAGCTCTGACATTCCTGTGAAGCAGTAAAGATT1060.10726682115787449No Hit
GGTGTAGGGCTGGAGGATAATGAAAAGTCCGTGTTTTGAAGTTTTCAGATTA1060.10726682115787449No Hit
CTTTCCGGGCATGATGTAATGTCTACAAACACAGCACACTTTGAAGTTTAAT1060.10726682115787449No Hit
TTACAAGGGATTCCTGTGTAGCATGTTAACAGGTGCTTACCACCCTTAGAGA1050.10625487001487569No Hit
TGCAGTGGGATATTATTTATTGCTAGAATCAGACGAAGTCTAACATCAGTTT1050.10625487001487569No Hit
TTAGCTGGGAACAGGAAATCTGTTTATGTCTCTTTATTTGAAACCAGTTTTA1050.10625487001487569No Hit
CTTGGTGCGGGAAGTCAAGGTCTTGGGAAAGCTTAGCAAAATGGTGCAAGTC1050.10625487001487569No Hit
TGTTAGGGCGATCTTGCAGGGGGCAGAATCCTTAGGGGTGGGGTCCAGGCCT1040.10524291887187687No Hit
TAACTTGGGGACAATTTAATAATTTAAAAACAAGACATCTCCAGGTAGGAAA1040.10524291887187687No Hit
TTAACCGGGCCTCTTTGCAACCGGGTCAGAATGGCGGCAGTGGAGCATCGTC1040.10524291887187687No Hit
GTAGTAGGGAATTCGATGAATGTAGCTAGTAATAATCACACATTTTTAACGT1040.10524291887187687No Hit
ATTAGGGGCATCAGTTTTATAACATCTGAAGCAAGTGAAAGGTGCCATCAAG1030.10423096772887805No Hit
CTTTGTGGGATATAGATTAGATCTCAGTATTTAAACTGTTCCTCAATTTTGT1030.10423096772887805No Hit
TGCTCGGGGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTCGCC1020.10321901658587923No Hit
TCGAGGGAGGACATATGAAGAGTGCAATGGCAAAACAAGAGCAAAAAGCACT1020.10321901658587923No Hit
TGTACTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1020.10321901658587923No Hit
ATCGAAGGGATCGTGGCTGTGACTGGTGACGGTGTGAATGACTCTCCAGCTT1010.10220706544288043No Hit
TAATATGGGAGCTAGTAAGTGGCAGAACCTGATTCAACCCAAACAGTCTCAC1010.10220706544288043No Hit
ATATATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1010.10220706544288043No Hit
ACTATAGGGTCTAAAACTTACTGAGCATTTATTATATGCCAGGCATTCTGCT1010.10220706544288043No Hit
TTTGGTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1000.1011951142998816No Hit
TGATTTGGGTGGCTGGGTGGATCGCACGTAAAGCTTGCCACTAAAAATCAAA1000.1011951142998816No Hit
AACAACGGGCGATCTGGCAGTTGGGAAGGCTGGGGAGCTGTGCTTTGGAAAA1000.1011951142998816No Hit
GGCATTGGGTTCTAGACTTCTTAACAGAAAAAACAGTTTGGGTTCAATAGCA1000.1011951142998816No Hit
ACCGCTGGGACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCTCT1000.1011951142998816No Hit
TTGCTTGGGCTGAGCATTGCACCGGAAGACCCTTTTGTTATGCATGAGGTCG1000.1011951142998816No Hit
GAACAGGGGCGGTGAGTTATCACAGAAATAATGTTGCAGTTATGGTTATAGC1000.1011951142998816No Hit
ATTGGCGGGATATGTCATTTTTTATTACTCATCAGCAAACACATCCAAGAGA1000.1011951142998816No Hit
ACGCCAGGGTGTTCCCTGCAGCCCTCCCACGGGAATGACAATGGATAAAAGT1000.1011951142998816No Hit
AATTACGGGAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAAC990.10018316315688279No Hit
TGCCTTGGGTCTGTCTCTTTGCTAGCCTAGGTGGCTGTATACAAATTCGGGT990.10018316315688279No Hit
AGTTTTGGGGTAAGACTTTTAGTATAAAAATAACAATGTAGGATGACTAGAA990.10018316315688279No Hit
CTGGACGGGGTGGGCTTTGAATCATACCTTTACCATTTACTAGCTGTGTGAT990.10018316315688279No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)