FastQCFastQC Report
Sat 31 Dec 2022
SRR5848759.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848759.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139216
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC7630.5480691874497184No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT7510.5394494885645329No Hit
CGACCTGGGAAACCATAACAATTATAAAGATAACATCAGAAAAAATCCTTCT1760.12642225031605564No Hit
TTTCATGGGAGAGCACTCTATCTAAATAACAGCAGAATACACGTTCTTCTCA1750.1257039420756235No Hit
AATCTTCATACCCCAGTCAAGTTTCTCCATTGCTCAATAATGTATAATTTAT1660.11923916791173428No Hit
TGAGAAGGGAATATGTGAATCCAGAGATAAGTTTATACGGGAATTATTTGAA1620.11636593495000574No Hit
ATTTAAGGGCAGCAATCTGATATTTTTATGTGAATCATCTTTGGAATTCGTG1610.11564762670957363No Hit
GATCATGGGATGAAACCCAGAGTCTTTGTATAAACTCTATGGATTTTCTTCC1580.11349270198827721No Hit
ATTGTGGGGACCAAGCAGAGACCTCTGCCTCACACACAATCAGACTGATGAT1580.11349270198827721No Hit
TCAAGTGGGATGGTATGGCAGCCATTCTTTTATCTATTTAACCAAGAGGATG1570.11277439374784508No Hit
ACAGTGGGGGATCTAAACATGGGTGGTGGAAGAACTGGCCTGTGATGGCCAT1570.11277439374784508No Hit
CTGACTGGGAGACTTTGGCTTCATTTTTAATCTTTTTGGAGATTAAGTGTCT1570.11277439374784508No Hit
ATAAATGGGTTCTTTTATTTCTTGGAATGTAAACTGGAACTATTTCTGGAGG1560.11205608550741294No Hit
GTAGGCGGGCATGAAAAACAAATGCAATGTTTGGATCTTAGTTTGAACAAAT1560.11205608550741294No Hit
ATCATAGGGAAGCCATTCTAATATTATTAAAAATGCATTGAAAACAGCATTA1550.11133777726698081No Hit
TGCGTAGGGGTAGCAGCTGAGGTATGGTTGTTGGACGAGGCCGATTTTTTTT1550.11133777726698081No Hit
ACCAACGGGGACCTGTTCAATACATAATCCTACTTGCCTGACTTACTCTTTC1540.11061946902654868No Hit
CTTGGCGGGCTAGAACCAATGACAAACGACCCCGTGAACTACGTGAGGCAAG1540.11061946902654868No Hit
TGATTTGGGCGATCCTAGGAATGGGAAGTTATCTCTTTTATAATATTTTAAG1520.1091828525456844No Hit
TGCAGTTGGGCATTTTGTTCCTGGCATTACCTGTTTCCCATCCTCTTCCCCC1500.10774623606482013No Hit
GATTAGGGGTATTTAGGTTGTTTTGTTCTCTAAATGTTTAGCACTTAGAGAA1500.10774623606482013No Hit
GTAGCTTGGGAGAATGGCGATTATTAAAAAGTCAAGAAACAATAGATGTGAG1500.10774623606482013No Hit
TTGAATGGGCTGTACCACGTGCAGATCAATTAATGTGATTCAGTATATCAAC1490.107027927824388No Hit
CTCCATGGGGGCTGGTGAGGTAGAAGGGAGTATATCAAATACCTGTTCTGTT1480.10630961958395586No Hit
ACGCATCGGGAAAAGCCAGCTCTTGCCATCTATCTTGCATTAAAAGGAATTC1480.10630961958395586No Hit
GAAAAGGGTAAGACAACAAAAGAAGTTTGCTGCATCAATTGACTCTTCCTTT1460.1048730031030916No Hit
GCTACAGGGAAATGATAATAGAAACACAACATACCAAAACCTATGAAATACA1450.10415469486265945No Hit
TAAATGGGGAAGTGGAGTTAATAACTGAAGAATTGGTTATTCCCAAGTGACT1450.10415469486265945No Hit
TACATGGGGTGTACAAGTTGTTATTGTTGAACATACTTCAAAAATAATGTGC1450.10415469486265945No Hit
ATCGCCGGGATGGAGGATTAATTCATGAATCACTTTTGTTACTAAGTTTTAT1430.10271807838179518No Hit
TCTCTAGGGGAAAGGACTAGACTTGGTCTTTAAGCTCCCTTCCGATTCTAAC1430.10271807838179518No Hit
GGCAATGGGACCGGCAGTACCTGTAAATTTGGGTGAATTTCTTTCTTCTTGA1420.10199977014136306No Hit
ACACGGGGAGTTTTAGAAGATGAATTTGTTTTTGTTCCAAGGGTTTTTAAGT1420.10199977014136306No Hit
TGCTTGGGGCTGAGCCATACCAAGTTTACCAATGCTGTGGGAAAAAATCCTC1420.10199977014136306No Hit
AGACAGGGGGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCAA1410.10128146190093092No Hit
ATAATGGGGAACGTTGTCTGCAAAGTTGAATTTTAGTCTTTCAGTGTAAATT1410.10128146190093092No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)