FastQCFastQC Report
Sat 31 Dec 2022
SRR5848743.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848743.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207591
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC13940.6715127341744103No Hit
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT12940.6233410889682115No Hit
GAATTTGGGGCAGTTGCTTATAGTTAGTGTCTTTAATTAAGTTTCCATCATT2620.12620971044024065No Hit
GCAGCATGTGAACAGTAATCAGTGCCTGGATAAAGCCACAGAAGAGGATAGC2590.12476456108405472No Hit
TTAGCCGGGGTACTTGGCATTTAACAACTAGAATTCAGAATCCAGATTTTTA2520.1213925459196208No Hit
TGTGCTGGGTAGTAAAACCCAGTTATATGCCTCTATCTGATATAGCAAACAT2510.12091082946755882No Hit
TTCTAGGGAAGATAATTAAATGAAATACTTGACAACATTTTTCATTCCTGCT2500.1204291130154968No Hit
TGATGCAGGGAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGA2480.11946568011137285No Hit
ATTTGTGGGGTAGCCTTCAAATTTTATGTATCCAAATTTTGAAGAAGCTGTT2450.11802053075518688No Hit
TGCGCAGGGAACATGCGACCATTTGACTATGTTACAACCAAGAGATCCAAAG2440.1175388143031249No Hit
GCATCGTGGGGGGTGCGCGGGCGCAGAGCCTGGAATCCGGGCGCTGGGGCCC2440.1175388143031249No Hit
TGCGCTAGGGGAACTGACACTAGTGATGTCCCATATTCTCAGGACCTTGATC2410.11609366494693893No Hit
CTCAGAGGGCAAGTACTGGCTTTATAAAGAAGAAGGCGAGAGGAGACACAGG2390.11513023204281496No Hit
GCCAGAGGGATTCATTAAAATGTACAGCAGTAGAAATAAGAAACATTATTGA2380.11464851559075298No Hit
TAGCAGGGGAAACTATAGCAGCTCATGCTCACTTTCTAGGAGTCTTGGGAGT2370.11416679913869099No Hit
ACGCGTGGGTCAGCTTGCTCCCTTCTCTTTTAATTTCAGCTATCATTTTTAG2360.11368508268662898No Hit
AAGTAAGGGGGAAGCAAATTGGCTACCAGACTTTATGTGGAAGTCATGCTTT2340.11272164978250501No Hit
AATGACGGGTCTAGACGATGGTTTTAGATGATAACCACAGGTCTACAAGAGC2330.11223993333044303No Hit
TTTAATGGGGCATACAGAAAAGAGAGTAACCCAATAGTGAGGAAGAAATTGA2310.11127650042631906No Hit
AAAGTAGGGAAGAAGAGTCGGGCTCCAGCAGTGCTTCAGTGAGAACCCAGCC2280.10983135107013309No Hit
GATCCTGGGATTTTGAGCAATTATATGCCAATAAATTGAAAAACCTAGAAGA2280.10983135107013309No Hit
GCACTAGGGAAGACCAGATGGGTGAAATAGCCAATGTATTGGAGCCTAACAT2270.10934963461807111No Hit
CGTGCCGGGAACAAAATACCTTAAGACTGGATAATTTATGAAGAACAGAAAT2260.10886791816600912No Hit
TGCACTGGGTACCTCTTGTATAAAATAGCTGTTTAATGAAACTTCTTTAGAA2260.10886791816600912No Hit
CTGTAGACGGGCGGCCACCACCACCCCACAACACCCCCAAAAGGAACAGTTT2250.10838620171394714No Hit
TAGCAAGGGGGTGCTCGCCTTCGGCCTCTCTTGGAACTGCACCACCGACCAA2230.10742276880982317No Hit
CTATCCGGGTTGAAAGGAACTGTAAGCTTTTATCTTTTAACCAACTGAACAA2230.10742276880982317No Hit
TCATTTGGGGAATTGCTTCTCCCACTCCACTGCCCATGCTTTGGTTCACACC2230.10742276880982317No Hit
ACGAATGGGAGCTCACTGCAGCCTCAACATCCTTGGCTCAAGCAATCCTCCG2210.10645933590569918No Hit
ATGTTTGGGGGGAAGAGTACAGAGGTGGCAGAATGAAGCTAGAGTGGGAAGG2200.10597761945363719No Hit
CACAGCAGGAAGGAAGCAGTGTAAATGGAGGTACACGGGAAGCACTTCCTTT2180.10501418654951322No Hit
CATCACGGCTAGATATGATTGTACAAGAATCTCCATTCCTTACAATGGATCT2180.10501418654951322No Hit
CATCGTGGGCAGGAAGCTAAGCATGAACGCATTGAAAACGATGTTGCCACCA2160.10405075364538925No Hit
ATGCCAGGGAGGCAACATTGTTTCCTGGGTCTTTTCAGAGATCTTATAGATT2160.10405075364538925No Hit
ACTTAGGGGGGTCAGGTGGCCTTGGCCAACCAGTGCCTCTCCCAAGCTGATG2160.10405075364538925No Hit
TGTCAGGGGTAACTGAAAATCTTAAGTGTAGAGATAGCTTACTAGCTAATGG2160.10405075364538925No Hit
TTAGCCGGGAGTCAAAAGGCCCTTGATTAATATCTGTCTTCTTGAGTAATTT2160.10405075364538925No Hit
GCAGTAGGGAGGGGGAAATAACAATACTAGAAGTGTGCAGTTTTTGCTTTTA2140.10308732074126527No Hit
CCAGGCCCAGAGAACTCTTCCACAAACAAGATGAGAGCCACTCGGGAAAAGA2130.10260560428920329No Hit
GGGGTGGGGATACCAAGATGTTATGAGGTTGAACCCGACACTCCTTCTCCTT2110.10164217138507932No Hit
GCAATGGGGGGAATAAAGAGATGGGCATTGTTTCCCCTATAATTGTGCTGTT2090.10067873848095535No Hit
CGATTCGGGATACTTAAACGTGAAAGGTGACTAAATGCGGGGAAGAAAGATT2090.10067873848095535No Hit
TAATCAGGGGGTGGCCCGGGCGTCCGCTCCTCAGCGGATGTGGCAGCCCCGA2080.10019702202889336No Hit
ATGAGGAGGGGATCATGACAACGTCAGGTATGGCATTTCAAATATAGATACA2080.10019702202889336No Hit
CTGAATGGGACTATCTTGGAAGGAGTGCTGGCAAAATTATCCAGATATGACG2080.10019702202889336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)