FastQCFastQC Report
Sat 31 Dec 2022
SRR5848447.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848447.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219898
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCTCGTATGC17510.7962782744727102No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCTCGTATGCCGTCT15730.7153316537667465No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCCTGTCTCTTATAC2480.11277956143302804No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCCTGTCTCT2390.10868675476811977No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)