FastQCFastQC Report
Sat 31 Dec 2022
SRR5848446.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848446.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences217727
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCTCGTATGC16080.7385395472311657No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCTCGTATGCCGTCT15680.7201679167030272No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCCTGTCTCT2280.10471829401038917No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCCTGTCTCTTATAC2200.10104396790476147No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)