FastQCFastQC Report
Sat 31 Dec 2022
SRR5848422.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848422.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences250592
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCTCGTATGCCGTCT18170.7250830034478355No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCTCGTATGC17770.7091208019410037No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAACAGTATCCTGTCTCTTATAC2570.10255714468139446No Hit
GATACAGGGAGGGAAATTTTGTCAATACACTCAAAGCAGGAAAATGTATTTC2570.10255714468139446No Hit
ACGTCCGGGCGATCTCGTCGCGGGAACGTCTCCTGCCTTTCAAGGAGAATAC2520.1005618694930405No Hit
TGTTAGGGGAAATTATTTTAGGAAATGGAAGATAAAGTGACTAGTCCAGAGA2510.10016281445536968No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)