FastQCFastQC Report
Sat 31 Dec 2022
SRR5848402.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848402.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146823
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCTGTGATCTCGTATGCCGTCT5640.38413600049038643TruSeq Adapter, Index 5 (95% over 21bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCTGTGATCTCGTATGC5370.36574651110520834No Hit
TGATTTGGGCTCTTTGAAGTGGAAAGAACTGATGCATTAAACATTCCTTAAA2130.14507263848307145No Hit
AGCGTAGGGATAGCATGCAAAAAAGAAACTATATTTTCTGTCCTGTTCTTTG1980.13485625549130587No Hit
AGAAAAGGGATCGCGGCTAGAGAGATGTCGCTGCTGCGGTCGCTGCGCGTGT1960.13349407109240377No Hit
TGTGTTGGGAATGCCAGCCTCTGTGCCCGACCTCGGAAAACTGGCCATGCCC1910.13008861009514858No Hit
CTAAATGGGGTGGTGAGAAAGTTCTTGAGGATGGTAAGGAGCTCCACATTTT1890.12872642569624648No Hit
GGAGCTCCTCATGTACTCCCATGACAACATCATCTGTGGCATCACCTCTGTT1880.12804533349679545No Hit
AGTTCCGGGTCTCATGGATTTGTTAGGAGTTCTCTTGTATTTTCTGTATTTT1870.12736424129734442No Hit
TGTCAGGGGTGCTCCTGAAATCAACCAAACAACCAAACAGACTCTCTAGTCT1860.12668314909789338No Hit
CTTGTTGGGGCACCCACTGCTGCACACTAAACTGTCTGCCACCGGCTCCCTC1840.1253209646989913No Hit
TTTCATGGGGTGGTGGTTGCACAACATTTTGAATGTTCTACATACAACTAGA1830.12463987249954026No Hit
TCGCCTGGGACTCAGAGAATGTTTAAAGAAATGAGGAATGAAGAAAGGGAGT1830.12463987249954026No Hit
CCGGCTGGGAATTCCACCTGAGAACAAGTCCCGCAAACCGGGGACGGAAGGA1820.12395878030008922No Hit
AAGCATGGGGATGGAGGTTCCACAACAAACAAAAAATAGAATTATCGTATGA1820.12395878030008922No Hit
CACGTGGGGATGCAGCAAAGACCTAGTATTAAGGAAGTTTCCCACAAAACAA1810.12327768810063819No Hit
GAGTCTGGGAGGATGGTCTCGATCTCCTAACGTCGTGATCCTCCCGCCTCGG1810.12327768810063819No Hit
TCGATAGGGGATTTATGCATTTATGCATGAGAACTAAATAGATTTTTAGATT1800.12259659590118716No Hit
TTTTCAGGGTGAAATAGGGACCCCAGAAATTGACAGATGAAAGGAGACAATG1800.12259659590118716No Hit
GCTATGAGGTGCTGAAGTTCGATGACGTGGTCACCAACCTCGGCAATCACTA1790.1219155037017361No Hit
CACATAGGGATTCAAGTGCGCAGGTAATTACTTGGTTGAAACAATAGTGTTT1780.12123441150228506No Hit
GGGATGGGGGAAATTAATATACTTATAAAATTAAGATTTATTAGCCAAACTT1770.12055331930283403No Hit
TGCTCCGGAGTTGGGAAGGTGGAGAGAAGTGGTGGGGGGCAGGAAAAGTTTT1770.12055331930283403No Hit
CTGATGGGGATTTCCGAATGTGTATGGCTGTATGGATTACTGGGCCTGGACA1770.12055331930283403No Hit
GCTTTGGGGATATTTTAAATAGACTAACTTTTAAGTGAATGCTTTGTACTTT1770.12055331930283403No Hit
TTCTTGGGGATAAGGAGAAAGTCACCAACAGCTTGATCTATTATTTTTCCCT1760.11987222710338298No Hit
GACTTAGGGCAAACAGAAATAGTTTTATTACTTGCTTTGTAATTTCCTTTTA1760.11987222710338298No Hit
TATAGTGGGCAACCAGAATAACTCCTCTTAGAAGAATCATCATCCAGCACTA1750.11919113490393195No Hit
GTTCCTGGGAGACGTCGGAAGAAACTCCCGTATTTGCAGCTGGAACTGCAGC1750.11919113490393195No Hit
ACGGTGGTAGGGCAAACTTCAAAGCAACAACAGTTAAAAGAGACAAAGAGGG1750.11919113490393195No Hit
AATACAGGGGAAGTAGATTATTCAAACAAACAAGGCGAAGAGCAACCTTGGG1750.11919113490393195No Hit
TTTTGAGGGAAGTTTTCATTGGTAATGGATTTATTCCAGACAGGACAGGTTA1740.11851004270448091No Hit
CAAATGGGGGATCTTTCTGCGGCGCGCGGACACCCGCCGGTGGAAGAAGAAA1740.11851004270448091No Hit
TATCTCGGGGACATTGGGGCGGGATGTGGGAGCGGCTGAACTGCGCAGCAGA1740.11851004270448091No Hit
AGGTTCGGGATATCTGATCCCTGCAAAATACTTTGACTTGTCATTTTGTTGA1720.11714785830557882No Hit
TGATGAGGCACACTACTGCATGACTACAGATTTAGACATTCTTAAGGAGCTC1700.11578567390667675No Hit
AAAAGAGGGGATTCCCGGAGGGCAGTTGGGGAGCGCAGATCCCGAAGCAGCG1700.11578567390667675No Hit
CATAATGGGATTTTTGTGCTGCTGTACAATGTTTATGTTTTAAGATATCTTA1700.11578567390667675No Hit
TGTCCAGGGGTCATTCTCCCTGTGGATAAAAGAGTTGTGGAGCCCAAATTCA1690.11510458170722572No Hit
AAAACCGGGTTGCTCAAAAAATGTCTTTGAAATCTGTCTAAAGTATGTAGTT1680.11442348950777467No Hit
TTTAAAGGGATGTACAAAGCATTATTGAAACAGCGATGATATAAAAAGAAAT1680.11442348950777467No Hit
TGTCTGGGGGCTCCAATGCATTTGCATCAGAATTCAGAGTTCAGTCTGCTGA1670.11374239730832363No Hit
AGGTATGGGAAGCTAGCGGAAGACAAGAAATAACTAAGATCAGAGCAGAACT1670.11374239730832363No Hit
TTAACTGGGGAGGCAGGAGAATTGCTTGAATCCGAGACATGGAGGTTGCAGT1670.11374239730832363No Hit
GCATAAGGGGAAACAAGATGTAGACATTTTGACTACAGCATTTCAATTTCCA1660.11306130510887258No Hit
GCCAGGGCGATCTTTGCAAGGGTCAGCCGAGCTGGACGAGCAGGACATCTTG1650.11238021290942155No Hit
GTGTGGGGGCCGATCTGATAATGGGGAGGTAGGCATTGAGGCAGCCAGCGCA1640.11169912070997051No Hit
TGTTAAGGGATGTAAATGTGAATGGAAACTTGGAAATACTCGTTTTTATAAA1640.11169912070997051No Hit
AGTCACGGGGGCTGACCAGGTAGTAAAGGATGAAGCTGGGAAAACCAGTATC1640.11169912070997051No Hit
TGGTACGGGATCTGGGAGTAAACTTAACATTCACTGTGTCTCTGCTCTGCAT1640.11169912070997051No Hit
ATGTATGGGCAAAAAGTAATGTGTATTCAACTTATCAATAATAAATGTTAAT1640.11169912070997051No Hit
GTGCCAGGGACTGTGATGCCGGCAGGCAGAGCAGCTACTGACTTTGAACATG1630.11101802851051948No Hit
TGGCATGGGAAGAAACAACTGTCAGGGCAACCAGTATATTTGAGAGGACATG1630.11101802851051948No Hit
TGTCAAGGGATATTGACAAATTTATTGAAGACACAGAAATTTTACTAATGCT1630.11101802851051948No Hit
ACACATGTTTATTATTGTCTAGCGTCTCCTCCATTATTGAAAGTGGGTATTA1630.11101802851051948No Hit
ATGCTAGGGTAATCTCAGAAAGGGCCTGTTCAAAGCAGACGCTGTCTTCTTT1620.11033693631106842No Hit
ATAGCAGGGAGACATTTAATAGTATTCTGACTCAATATGATGGTCAATGTGA1620.11033693631106842No Hit
GTTCAAGGGGTGGAACAAAATCCTGTTTTTAGAGTGTTTAACTTTTACTTAT1610.10965584411161738No Hit
TAAGCTAGGGGACCATTCTAAATTTGTCTATTTCTCTAGTCCCTGATGAATG1610.10965584411161738No Hit
TGATATGGGATCTGTCATTCTAAGAAGACTGGACTCCATGCTAAAAGCAGTA1610.10965584411161738No Hit
TTACCTGGGGTGGTCGCTGTAGTCTTCTGCCAGTTGTAAATAATTCGGGTGC1610.10965584411161738No Hit
ATTTTTGGGTAAGACATTGTGTAAAAAGCAATCTGTAAAAACATCTCCAGGC1600.10897475191216635No Hit
CGTTCCGGGGGGCCAGTTGTGGGGTTGGTAAGCACAGTTATGAAAATTTCTA1590.10829365971271532No Hit
CAACCCGGGCACCCTCGGCCCTCCCTGCAGCCTTAACATTCTCTTCCCCTGC1590.10829365971271532No Hit
CTGAGCGGGGGAAAGGAAGACATGCAGTCGTCCTGCCTAGCTCATCCCCGCC1590.10829365971271532No Hit
TTATCTGGGCAGTGAGATTTCTGGGAGAGAGATTGAACAATGAGCCATCAGC1580.10761256751326427No Hit
AGCAATGGGGGAGTGCTTTAGCTCTGACTCAATACCCTCCTCTGCTAGAAAC1580.10761256751326427No Hit
ATGATTGGGGAATCCAATAAAGAGAGGCAGCTTGGAAGTAAGTAAATTTTTG1580.10761256751326427No Hit
GTCAAGGGGAGCCTCTTCCCTGTCATATTTTTCTCCATAGCCATCCTCCAGT1570.10693147531381324No Hit
TAAGCAGGGACCTTTCCGAGTTGGCTGCAGATTTGTGGTGCGTTCTGAGCCG1560.10625038311436218No Hit
GCAAACGGGATTGTATTATTATTGTTATTTAAGAATATTTGTTTAAGGAAAA1560.10625038311436218No Hit
GTCATGGGGGGATACTTGAGTTTTTGCTTTTAAGGTGTTTGTTTAGGGATAC1560.10625038311436218No Hit
CGTTATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1560.10625038311436218No Hit
GGTCAGGGGAGGGTGACAGACTTCACCGGAGATCAGAGATCAGTTGATGCAG1560.10625038311436218No Hit
CCCTGGTTCCTAGATGTGTTCTAAGCAATGCAAATGTCTAATTGTCCCCCAG1550.10556929091491114No Hit
ACCACTGGGCTCTAAAAGGTTAATTTCTGTCAAATGCAGTAGATGATGAAAG1550.10556929091491114No Hit
TCGCCGGGGGCCGAGAGAAGCAGTAGTCAATAAAGAGAGTGCCGTATTTCGC1550.10556929091491114No Hit
AGCATAGGAATAGTGGGAGATTTCAATACTCCACTGACAGCACTAGACCAGC1550.10556929091491114No Hit
CTCGTTGGGAGATGATGATAATGGAGGAATACTCGTGGACAAGATGAGTTAA1550.10556929091491114No Hit
TCACAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1540.10488819871546011No Hit
AGGATGGGGTTTTCAATGCAGTTTTATTCTACTTCTTATTCTGATTTAAGAT1540.10488819871546011No Hit
GAACCAGGGATAACTAAGCGTGAGTTATGGCAGAGACAACTTGAAACACTGC1540.10488819871546011No Hit
AGAATAGGGGGGTGCTGTGCGCGCTGCTCCTGCTCTTGGTGCAGCTGCTGCG1540.10488819871546011No Hit
TGGTCAGGGCATTTTAAGGATGGGCATAAGCAAACTATATTTTAATAATTTA1530.10420710651600908No Hit
TTATAAGGGGATTCCCTCAACCAGAAGGTAAGGTAGAGATTCCTGGCCCTGG1530.10420710651600908No Hit
GACTACGGGATGAAAATAATGTAATGGGATTCCAGAATGTTTATAATCAAAA1530.10420710651600908No Hit
ATATATGGGGATACGATTATTTAGAAAACTTTTTCATTTTTTCCCATAAGGT1530.10420710651600908No Hit
GACTACGGGAGCTTTCCATAATTCAGTATCCCACATTATCTTCTGTTGTACC1520.10352601431655804No Hit
GCAATTGGGATGATGCTGATGCTGCTGATCCAGGGACCACACTTTGAGAATC1510.102844922117107No Hit
TGTACTGGGTTGTATGTTATATGGACTCTTACGATAAAGTAAGCAAGAGAAA1510.102844922117107No Hit
AAGTCGGGGCTGCCCTTGAGAGGATCGACACATGTTTTTGTGGAGAATTCAG1510.102844922117107No Hit
AAAGTTGGGTCCAGCCCAGTGTCAAGTCCCTGCTGCAGGTGCTGGGCTCTGT1510.102844922117107No Hit
TGTTCTGGGGTATCTGGGACTGTTAAACTTATGTTGAAATATTGACATATTT1510.102844922117107No Hit
GCTAGGTGGGACTCATTAGTCATGAGAGAGTTCATACTGGAGAAAAGCCTTA1510.102844922117107No Hit
CGAGCTGGGCCACTTCTGAACCCTGTTACCATTCCCCCTCACAAATCCCCAC1510.102844922117107No Hit
TTTGGTGGGAGTCTTCAGTGATCATGATTCACTAACTTTCTGTGCTAGATAT1500.10216382991765595No Hit
AGCAAAGGGAGCAACAAGAACGGGATAAAGATTTGATAGAGTCACTTTCTGA1500.10216382991765595No Hit
TAAACAGGGTGTCTTGGCGTATTGCCAATTCACCACTTTCTACTTTGTGCTG1500.10216382991765595No Hit
CCATTGGGGGAGCAGCTCCTGCCGTTCTTCAATGTGCTCAGTCAAGTCTTCA1490.10148273771820492No Hit
TCTACAGGGGTAGAGAGGATCAATAAAGCCGACATTTTTTTTAAAGACTGAT1490.10148273771820492No Hit
CGGTGTGGGATATCTATACCTATGGAAGATAGAAGGTACACAATTTTTTTTT1490.10148273771820492No Hit
AATACGGGTCTGCGCATGGGGGAAACACAAGTTAACTAGTGTTTAGTTTAAC1490.10148273771820492No Hit
TCTAACGGGGCTCTCTTTCCTTGCCTAACGCAGCCATGGCTCGTGGTCCCAA1490.10148273771820492No Hit
CATGGGCAAATAAGTGAAAGATCTCCATAAGGAGAGCTACAAAAACTGCTGA1490.10148273771820492No Hit
TTATCTGGGGAAAAAGTAGTATATACTGTGAAGCAAAGTGCAGAAGATGTTA1490.10148273771820492No Hit
TACCACGGGCATTTCAGTGGAAGGAATTTTATCTAATATTACCTTGTGGTAC1480.10080164551875387No Hit
CTTGTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1480.10080164551875387No Hit
TGGCTGGGTTCTTCATGTTTGTCTTAGCTTGTTGTTGGTTTCCCACATCTAA1480.10080164551875387No Hit
GTAGATGGGACAGAAATAGAAAAATCTATTCTAAAAGTGACGCGAATCTCCA1480.10080164551875387No Hit
CATCTAGGGTAAGAACTTTGGGTATATAGTCAAATTCCTCACATTTTTAGAA1470.10012055331930284No Hit
TCTAGTGGGTCCGATCTACTATGGGAATGATAGTTCTGATGTAACATTCGAT1470.10012055331930284No Hit
AATCATGGGAGTGTATTGGAATTTTATCCTTTCTTATGGTGAATGGACAGTG1470.10012055331930284No Hit
CAAGTCGGGTGTCACTGGCTCAGGGGATTTTGATGTGCATGTTTTGCCTCAG1470.10012055331930284No Hit
CTTACTGGGGCCATAGGAAAACATGTGAGCAACAACCCCCATGAACATTTGT1470.10012055331930284No Hit
GTCAATGGGGTTCAAAATGGAGTGTTAAAATCGCTTTCCTTCTTGTTTGAAT1470.10012055331930284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)