FastQCFastQC Report
Sat 31 Dec 2022
SRR5848241.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848241.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120767
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGC7290.6036417233184561No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGCCGTCT6530.5407106245911549No Hit
ACGCGTGGGCAAGCGGAACCAGCTTCATGATGAGGTTCATCAGTGGCGACGG2660.22025884554555467No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTTATACA1840.15235950218188743No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTT1840.15235950218188743No Hit
CTTATTGGGAAGGAGAATAAAAAATTAGAAAAGATCTTTTTTATAGTTGCCC1810.1498753798637045No Hit
GCTAGGGTCCTCTCTTCAATGTATTTAGATCCACCATAAAGTAAACTGCCTC1800.14904733909097684No Hit
GCGTTTGGGGGAAAAAATGAAAATAGGAAAAAAGGAAGTGAAAGAGATAATA1720.14242301290915566No Hit
GGCATGGGGAGATCAAAGACCAAGCTCACCAATTCGACATCAGGGAAGGAAT1700.14076693136370036No Hit
TCGCAAGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG1640.13579868672733444No Hit
CAGCAAGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG1600.13248652363642388No Hit
TCCAGAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1590.1316584828636962No Hit
AACCGAGGGGGAGTAACTGAACACAAAGTTTCAAAGGGATGCATGCAATTCA1530.1266902382273303No Hit
CCAACTGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC1490.12337807513641971No Hit
GGCCTAGGGACTTGAAGGAACCTCAGCTATGATTTGGTCCAACCTCCTAACT1480.12255003436369206No Hit
ACTAGCGGGGATGCTGGAAACTAAACCAGCAGGGTCCGGGGAAAGAGAAAAA1470.12172199359096442No Hit
CATTTAGGGGTGCATGTGTATAAATTATTCCTTTTGAGTTTTGACTTACTGT1450.12006591204550912No Hit
TTTCTAGGGGAAAAAGAAATTAAGAAAAAATTCCATTTACGCTAACTAAAAC1400.11592570818187088No Hit
AGAAACGGGGTGTTAATTTTTTCTTGTTCAAAGGACTTGGTTTATTTAAATT1370.11344158586368792No Hit
CTAGAGGGAGACCATTAGAAAGCTTTTTCAATAATTGAGGTGAGAAATGATG1370.11344158586368792No Hit
TACAATGGGTACCAGGACGGGGAGCTGCAGGGCTCCGGTGAGAACCTGGCTG1370.11344158586368792No Hit
ATCAGTGGGGTTTTGAACAGAGGTATTTTACTGTAGTAGTTCTTGAGAAAGC1370.11344158586368792No Hit
CGATTTGGGATTACCACCTCTCTTTGTAATTTACTTTACTTGTATGAATTTA1370.11344158586368792No Hit
TTCTTGGGGATGGGAGTGGACATCCGCCATAACAAGGACCGAAAGGTTCGGC1360.11261354509096028No Hit
CAAGCCGGGAGGAAATAAGAAGTGTAAGATATCTACAGTCAAGAAATTTAGA1330.11012942277277733No Hit
CATAGCGGGAATTTACTACAATAGTAAATATACCAGTAAATTAGTAGGAAAT1320.10930138200004968No Hit
CACAGAGGGACCCCTTCTTCTCCCGTGAGAAGGGGAGAGAGCACCCCTTCTC1280.10598921890913908No Hit
CATAGCGGGGGAGGCTGAGGCGGGAGGATGGCTTGAACCCGGGAGGCGGATG1280.10598921890913908No Hit
GCATAAGGGAAGATTATATGAAAATGGAGTCAGTGATTTTTAGTAAAAGCTC1280.10598921890913908No Hit
CACCTGGGGACCCTCCAGAACATCCTCCTCGTCTACCACTTTCCTCCACATC1280.10598921890913908No Hit
ATAACGGGGAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCC1270.10516117813641143No Hit
ACTCTAGGGGATAGTTGTGTTTTGAAGGGGAGGTGAGGAAGTAGTGTGTGCC1260.10433313736368378No Hit
CACTCTGGGAAAATAAAATCCTAACTTTCCTAGTTAGAAATATAATTAACTT1260.10433313736368378No Hit
GTCTATGGGGCTGGTGACCAGCAAGTGTCAGGCTGACGCCCAGGCCCAGCAG1260.10433313736368378No Hit
GTTCCAGGGGACGGACGCCGTCCCTCCTCGGCGCGGCCTGAGCGCCCGGCCC1260.10433313736368378No Hit
TAATGTGGGGTAGTCAAAAAAAATTTAAGTGTACATTTTTAAATAAGTAAAA1260.10433313736368378No Hit
GCCAATGGGGAAGTTCTTGAGCTGAATTCCTGTTGTGACAACTTCCTATAAT1240.10267705581822849No Hit
AGTAGGGAGAGGAAAAACTGTGTCCTAGTAAAAACTCTATAGTTTTGAAGAC1240.10267705581822849No Hit
CAATTCGGGATTCTAGCCTAGTTGATAATTTTTATTTAAAAGGTGGTCCCTG1220.10102097427277319No Hit
TGTGGCGGGGATCCCAATTTCCTGGTGGTGGAGAAGGATACAACCATCAATG1220.10102097427277319No Hit
TCACCGGGGATTTTGGTCTGAGGTTTGAATTGCAAAGAAGAATAAGAAGTTG1210.10019293350004554No Hit
TTCTTTGGGCGGCCGCGTGTCCCTCCTTACAGGGGATGAAATGACCTGGGGA1210.10019293350004554No Hit
TCAATAGGGCATCTGGGAGTATAGACTTAGGGTTTATCTATTTTTTTTTTTT1210.10019293350004554No Hit
AAGGATGGGAACGAATAATATACCTTTAAAACACCCGGCCTCAACAGATAAG1210.10019293350004554No Hit
GCTGTAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1210.10019293350004554No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)