FastQCFastQC Report
Sat 31 Dec 2022
SRR5848237.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848237.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165676
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGCCGTCT9640.581858567324175No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGC7530.4545015572563317No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTTATACA2390.1442574663801637No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTT1790.10804220285376277No Hit
TCGACTGGGGGTAGAGCTTCTTTGACGTTTCCTATTTCTACCTCTGCTTGTA1670.10079915014848259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)