FastQCFastQC Report
Sat 31 Dec 2022
SRR5848236.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848236.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165980
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGCCGTCT9250.557296059766237No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGC7960.47957585251235085No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTTATACA2230.13435353657067117No Hit
TCGACTGGGGGTAGAGCTTCTTTGACGTTTCCTATTTCTACCTCTGCTTGTA1930.11627906976744186No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTT1710.10302446077840703No Hit
GTTAACGGAAGTTAGATCTCTGATATCCGGATCTCCTGATGGCATTAGCAGC1680.1012170140980841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)