FastQCFastQC Report
Sat 31 Dec 2022
SRR5848200.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848200.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80386
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGCCGTCT6640.8260144801333567No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGC5810.722762670116687No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTTATACA2220.276167491851815No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTT1450.1803796681014107No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGT860.10698380314980221No Hit
TAAGTAGGGCACCACACCCGGCAGCAATTGTATTTATATCAGAGTGGTGAGA820.10200781230562536No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)