FastQCFastQC Report
Sat 31 Dec 2022
SRR5848198.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848198.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81875
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGCCGTCT6560.8012213740458015No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGC6260.7645801526717557No Hit
AAATGCGGGCATGAGAACTGAAGGAGTACCAGAACTGAATGAATGAAGTACT2410.29435114503816795No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTTATACA1930.23572519083969465No Hit
TCTCAGGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1450.17709923664122137No Hit
TCAAATGGGATTTCATAGAAAGTAGCAATTTTTCAAATTGAACCCAGTAAAT1340.16366412213740458No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTT1310.16No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGT1230.1502290076335878No Hit
GTGTTTGGGTGATTTAAAAATGATCCCCAAAATAATACTACCTCACAGGATC1220.14900763358778626No Hit
GTAGGCGGGACACATGAACGACTGAATTAGAAATGGAAATGCCTGGCACAGC1210.14778625954198474No Hit
GAACTAGGGACTAGAAATGAGTTGGAAAGCTATGCCTATTCTCTAAAGAATC1210.14778625954198474No Hit
TGCCCTGGGATAGACTCATTCCGTACACACACATAGACACATTCCATACACA1190.14534351145038168No Hit
AAAACAGGGACCATACAATTCCTAAATTCTGTGAGATCCTTGAAGAAATATT1190.14534351145038168No Hit
ACTAATGGGCTCTAACTTGTGTGCACTACAGTTGTTCACCAGGGCCAGTGAT1170.14290076335877863No Hit
AGGTCTGGGGGTAATCAAAAACTTGGTTCTTTTAAAAGATTAACAAAATTGA1170.14290076335877863No Hit
AAGCTAGGGATTTGTAAATCTTTTCTCCTGTTTTGTGTGTGGCCATTTTTTT1150.14045801526717558No Hit
GCTTTTGGGCCACCATGCTAATCATCTCCATGCCAGTGTTGTAAGGACCCTT1150.14045801526717558No Hit
CAGTCAGGGGTCCCCAACTACTGTCAAACATTTACTTTTTAACTCCTCATGA1140.13923664122137405No Hit
TTCTCTCGGGGAAGTGAATTTAACTAGATGTAGTAACCTTTTTTTTCTTTAC1120.136793893129771No Hit
GCCACGAGGGGTTCTTTAAGTTCAATGAAGTCTGCCAGGAACATTGGTTGGT1120.136793893129771No Hit
GTAAAGGGTCGATCTGAAGCCGGGAGATGTACCTAGTGTGTATTTCTTATCT1100.13435114503816795No Hit
TGTCGGCGGGGAAAAATACAGGAAAGCTATGGAGATGTCTATGGAATTTGCA1100.13435114503816795No Hit
CCTAAAGGGATAGTCATTTTAGTCTATGAGACAAAGACTCACTTTGTTTTTA1100.13435114503816795No Hit
CCAATAGGGATCTTCAAATTCCCAGCAGCTATTGGTTCCTGCTACATAGTAG1090.13312977099236642No Hit
GCTTGCGGGAAGAGAAAAATCATTAAACATGGTTTCCTTAGCTTCTACTGGC1080.13190839694656487No Hit
TGATGCGGGATAGGTTTGATTTATATTGCCTTCATCATTCTGGTTTCAGACG1080.13190839694656487No Hit
CTCGCGGGCGATCTGTACTGGGGTATTAGAATCACATGGATAACTTCTAGAA1070.13068702290076334No Hit
ATCATGGGTTGCAGATGTTCAATACATTTGCATTAATAATTTATTTTAACTT1040.1270229007633588No Hit
CACAATGGGACCCTTCCCTCTTCAGGAAAGACAGGGGGGAGATGTTTTAATT1030.12580152671755726No Hit
ATGAGGGGGCGCTCTTCCGATCTAGTTAGGGGATTGATATTTACTTATTTTA1030.12580152671755726No Hit
CAATGAGGGTTGTTGGAAGCTTACCAAGAGATTTTGAACTATCCAATTATGA1030.12580152671755726No Hit
ATGTTTGGGGAGTAAAGTTGAGGCAAACCCTAATGAGCTTTCCCAATGCAAG1020.12458015267175573No Hit
TTACCAGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG1020.12458015267175573No Hit
GGCTTCGGAATGACTGTTGGTTCAGGCATGTTGTACTTTGTAGGGACAAATG1010.12335877862595421No Hit
AGCTTGGGTCTCCTATGTGACTTGTCCATCAATTATTCCAATTCAAAGGTCT1010.12335877862595421No Hit
TTGTCAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1000.12213740458015268No Hit
TTCTGCGGGAACAAAGGCACTTACAAGCAAAATACTTTTTCTTCTAAAAACA1000.12213740458015268No Hit
GTCATGGGGGTTTGTTCCTGTGAGGTGGCTCCAACATATTTTTCAGTGTCTG1000.12213740458015268No Hit
TACTCGGGGAGCCAGAAAGATGCCCTAGTTGTGATCAAAGGTAACTCGAGGT1000.12213740458015268No Hit
TTTGAGGGGGGCACTCGCGCAGACCTAGCGCGTCCAGGTGGGAGGTTAGTGT990.12091603053435114No Hit
GTGATAGGGGTGTTGCTTCAGCAAGAGTGGCCACGGGGCGAGAATCTTTTCC990.12091603053435114No Hit
TTGGCCTGGGATCATAAGCAGACTTGCCTTTTCAGATATTGGTATATTTTAA990.12091603053435114No Hit
ACTTAAGGGGTTAATTAAGTTTTCAACATAATTTGAACTCTTGTCTTGGCTT990.12091603053435114No Hit
TCTAAAGGGCAAGTATTGAGATAAGGGAATATAAATAGTATTATATGTATCA980.11969465648854961No Hit
GCTCACGAGGGGAGAAGGGTCATGAGGATGAACTGTGCAGTCACCTGGCAGG980.11969465648854961No Hit
ACGTTTGGGAAGGTGAGTTTCTTGGTAGCTTGAATAAGAATTAGATCATAAA980.11969465648854961No Hit
TGTTGTGGGAGGTCCTGGCACCTCTGCTGAGTGCCCAGCCTGAGATGACACA970.11847328244274809No Hit
GAATATGGGGATAGGTTAAATAATGGTTTCAGCATAGTGTTTGTTTTTTAGA970.11847328244274809No Hit
CGAGGGGTAGGACTTAATCTGTTGAAAAGTGCAGTTACTTCTGGAAATTAAC970.11847328244274809No Hit
CAACACGGGCAGAAAGCATACATCTAAGGGAACATTGTCCTTCAAAGTAGAC970.11847328244274809No Hit
TCTGCAGGGTAAATGAAGACACTTTGTCATGAAGGTTGTAAAGCACCAAATA970.11847328244274809No Hit
TAAAATGGGGTGAGGAGGAGACACCGCGATCACATGGCCCCCTATGCTGTTG970.11847328244274809No Hit
ATATACGGGCCGATCTGCGTGCGGGGAGTGACCCACGGCCATACTCTACCAT960.11725190839694656No Hit
ATTTTTGGGTGTCAGAGCAGTTTGGTCTAGAATTGTCTTGTGACAGCAATTA960.11725190839694656No Hit
GTAAATGGGCATCACTTAATCTGAAACAATAATGACTAAATCTTTAATAATG960.11725190839694656No Hit
ATTCATGGGGCAGAATTTTCATTTTGACTAGAATCCATTGCTAGAGAGCTAG960.11725190839694656No Hit
GCTATGGGGAGCTACGGCCGGAAGATGGCGGCGGCCGCAGAGTTGTCGCTAC960.11725190839694656No Hit
GTCACAGGGGCTTTCTTTGCTGCGTCTACTGCGAGAATGAAGACTATTCTCA960.11725190839694656No Hit
TTCTGTGGGCTTTACTGCATTAATGTCAAATTATTAGAATTGTATTCAAATA960.11725190839694656No Hit
CTCAGTGGGCTGGCGCCGTTGGCATCGTAGAGTGAACACAACCCAAAAACGA960.11725190839694656No Hit
CCAAGAGGGAAGGGACCCTTCCTTTCATTTTACACTTTGTTACTAATTTGCA960.11725190839694656No Hit
CAATTAGGGGGGTGAAACAGTGCGCCTCATGGATCTTCTGGGAGAAGGACTA950.11603053435114503No Hit
GACTCTGGGCATGTACTCATTAAGTTTGAAGAACGAGTTAAAGTTACCAAGA950.11603053435114503No Hit
GCCTTGGGGGAGATCTGAAAACAGAGGAGCAGGTAATTAGGGACCCAAAGAA950.11603053435114503No Hit
GGCCCTGGGAGTTGAATTGAATGTCTATAAGGTCTAAAGGTAGAATGTGAAT950.11603053435114503No Hit
CGTTTCGGGTCTAGAGTATTGAAGACAACCTCCTTCAACATTTTAATTCATA950.11603053435114503No Hit
CCTAACGGGGTAATAAGCCCCTGAGGACTATGCCTTTAATATCTGGAACAAG950.11603053435114503No Hit
GGCGCTGGGATCAAAGATGAAGTATATGTTGCTATGTCAAAAGCCAAAGCAC950.11603053435114503No Hit
ATGACTGGGATCTGGTTGTGACTCTAAGCTCAGTGCTCTCTCCACTACCCCA940.11480916030534351No Hit
GGATGGGGGGTCTGATATTTTAGTATATAGTAGAACATACTTTTTTTTTCTT940.11480916030534351No Hit
AATTATGGGAGAAGAAGAGCTAAAATAAAGGGAAATATATACCATGTTCATG940.11480916030534351No Hit
GCCAAGGGGTGCACTGCAGATCTTCAGGAAGGTGATAAAACAATCATGGTTT940.11480916030534351No Hit
TCAATGGGGGTCCAAATAATTTGTATTTGAAACATCTCTATACTTGTTATTC940.11480916030534351No Hit
CAAGTAGGGGAAAAATGAGATAGTTGATAGGTCGGCACCTAAACCAAAAATT940.11480916030534351No Hit
ATTCTAGGGTGCCTATAACATCCTGGCTAACCAGAGGTCCTGAGTCTGTCCA940.11480916030534351No Hit
ATACTGGGGCATTTTAATATCTTTCGAATTTCTAGGAAACATTCTATTGATT930.11358778625954198No Hit
TCTTAGGGCTCTTTTTTCTAGCTTTGAAACACAGGTATCTAAATTTAAGAAA930.11358778625954198No Hit
ATTAGTGGGTAACATAATAAAAACAGTATTTGAGAAAAGGCAAAAACTTTTT930.11358778625954198No Hit
AAAACTGGGTCTGAAAGCACAAGGTGATACTCATTTTTATGGTCTTCCCATT930.11358778625954198No Hit
TGCCTGGGAAATTTAGAAATTTGAAGCTACGAAATTAAGTTTGAATATGGAA930.11358778625954198No Hit
CTCCTCGGGAGAGCAGAACTAAATGAAATTGAAACAAACAAACAATACAAAA930.11358778625954198No Hit
CAGAAGGGATTTTTTACAATGTCTTTTGATAAGGTGAATTTTAAAAAATGAT930.11358778625954198No Hit
ACGCGTGGGCGATCTTGACCTGGGAGGGATTTGATAAGTGTTCATTACAGTT930.11358778625954198No Hit
CGGTATGGGAGATTGAACGAATGAATGCCTTTTACATTCAATGAACTATCAT930.11358778625954198No Hit
TCTGGCGGGATTCTGAAACTGTTTCCCTTACAGTCAAGTTAAACAAGCAAGC930.11358778625954198No Hit
GAACTAGGGATGGGAATTCAAGATGAGATCTGAGTGGGGACACAGCCAAACC930.11358778625954198No Hit
GCCTTGGGGAACCAGCACTCACTCAACTTTAGTTAGCAATGGATGTTCCTTC920.11236641221374045No Hit
ACTAGTGGGAATTTAAGCATTTTCATATGTGATGAAATTTAATATCTATAAC920.11236641221374045No Hit
ACGCACGGGTGGTCTGTGGGGTTTCGGGTTCGGGGTTTCCTGGTGGGCGTCA920.11236641221374045No Hit
TGGTGCTGGGAAACTCAGGTTTCTCTACTGAAACAACGATTACGAAATGGCC920.11236641221374045No Hit
GGCATAGGGAGCTGCACCTAAAGAGGAAATTGGGTTTATAAGAAAATGGAGG920.11236641221374045No Hit
AAAATAGGGCGTGCTCGCCATGTGCTCCAATCATAGGAGAATATGCTGGAGA910.11114503816793894No Hit
GTTACTGGGCAGGTCTGACTGACCACCAGTCAGAGGCACTTTATTTGTATCA910.11114503816793894No Hit
TTTATGGGGTAACCAGTACTTTTAAACTTAGGAAGTCCAGGGAAGGAAGTAA910.11114503816793894No Hit
TTAAAAGGGTCATCCCTTTGTCCAGTGTATCCACAATGTATACACTCATTAT900.10992366412213742No Hit
GTTATAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA900.10992366412213742No Hit
TGCGACGGGGTTGGAGGAGCAGTGGTGACGGGTGTGACAGCAGTAGCCCAGA900.10992366412213742No Hit
CACTGCGGGGACCTTCAGATGGATTTTTGCAATTAGGCGCATCTGGCTATTG900.10992366412213742No Hit
ATATGGGGGTAGCTATTAGTAAAAAGCATTTTGTTATACAACTTCTGAATAA900.10992366412213742No Hit
ATGCTTGGGCCCTCCACTGCTGTAGTAACCCGGGTCCAGGGCCTCGGTGGTG900.10992366412213742No Hit
CTCAGTGGGAACAATGGTCACCTCCAGAAATGGGCTGGGTAAACCAAAGAAT900.10992366412213742No Hit
ATACAAGGGAAGGTCAGGAGTTCAAGACCAGTGTAGGGAGACCCCCTAAAAC900.10992366412213742No Hit
TTCGGTTGGGCGATCTGTAAGAGGGTCCAATGAGCTGCTTTCCTTTCTGGGG890.10870229007633589No Hit
GTATCAGGGAACACATCAGGGAAGAGTTGGCTGAGCTGTCAAAGAAAAGTAG890.10870229007633589No Hit
AGAACAAGGGGACGAGTTGGTGGGTGCAGCGCACCAGCATGGCACATGTATA890.10870229007633589No Hit
TTAGCAGGGATGCTCTTTTGTGCCAACCTGAGGATAATTTTAACAAAATGTA890.10870229007633589No Hit
TAGAATGGGGTGAATCTGAAGGCTTGAAATCAACTAGTTTGAAAATCAACAA890.10870229007633589No Hit
TATAGGGAGGGGGTGTGGCAGGAGCTCCCAGCACTGGAGACCCACGGACTCA890.10870229007633589No Hit
AATGCTGGGGTTTGTTACACGAGGTCTGAGAGACAGAGGCAGCGTGTTTGAG880.10748091603053436No Hit
TATTCAGGGCAGAAGGGGACCTGTGGCAGTCACCTGATCCAGATCCGTTATT880.10748091603053436No Hit
ACAAATGGGGAATAACAATAAAAAGATAGGAAGTATTTGAAAAGAGCCCAGT880.10748091603053436No Hit
TTAAATGGGCCTCCCAGCTACTGCAAGCTGGCCTCCTAAGGGGCTGTGCACC880.10748091603053436No Hit
TGGACTGGGGGCAGTGCATGGCTCAGAATAGGAATGAAGTAAGAAGTGATGG880.10748091603053436No Hit
TCAACCGGGAAGGTGATAAATTTAAGCCCAATAATTACACTAACTAAAAATG880.10748091603053436No Hit
TGCAAATAGGGGAGATCATCTGAGATGTCTTTTTGCTTACAGACCACTCAGT880.10748091603053436No Hit
TTTGACGGGCTGGCTGACTGAGAAGATGCATGCCAGAGACTTCACAGTTTCT880.10748091603053436No Hit
GATACAGGGAGGTTTTTGCATTGATGTGTCAATTTTTTTGTTTTGTCCCAAG880.10748091603053436No Hit
GCCAACGGGTAACAGTAGCAGTAGCAGTGGTAACTACCAATAGGGGTCAGTA870.10625954198473284No Hit
ATCGCGGGCATAGAAGTCAAGTTTGCCTCCGAAGCAGAAGATAAAATCAGGG870.10625954198473284No Hit
TTGACTGGGGTCCCTCGGCTGAGAAACCCATTTCTGGATGACAGAGAATGTG860.1050381679389313No Hit
GCAGTCTGGGGTAATAACAGGCAGGGATTTGTCCCAGGATAACAATGTGTTT860.1050381679389313No Hit
CTACATGGGAAGGTAAAGGCAAACTCAGTAAAGCAGGAGTTTGAAAAACAAG860.1050381679389313No Hit
TGTATGGGAGGCAGTGGCGGTGCCTTGGTACAACCTGAAAAATGTTAAGGCT860.1050381679389313No Hit
TCTGCTGGGGACGCTCTTCCGATCTTCAAGTGGGGCTTCTGAGACTTCAATC860.1050381679389313No Hit
TTCGACGGGAGGAGGCCAGATGGGGGCCTTGCCTGAAAGACTGGTCCCCTTG860.1050381679389313No Hit
TCTTTAGGGCGCAGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGCGGCC860.1050381679389313No Hit
TACTGTGGGAGCAAAATTAGATGACTTTTTGGATCTAAATCACAAATATTGG860.1050381679389313No Hit
CACATTTGTAGCAGTACCAATTTTCGTGGTTGATTTTTCTCCAGCAGTGAGT860.1050381679389313No Hit
TATGCGTGGGACTAAAACTCCATCTCAAAAAGAAAAAATAAACAAAATTCTG860.1050381679389313No Hit
TTAATGGGGCAGGAAAGTGAAGGCGAAATCCATTGTCTTCCACCGAAAGAAG850.10381679389312977No Hit
GGATACGGGCTAGCCCTTTTATCAACTCCTAGAATAGTTAAAGAGAGACACA850.10381679389312977No Hit
TAGCGCTGGGGATTTCTGATTAAAAAAAATTTAGAAGGAAAATTTTAATGCA850.10381679389312977No Hit
AAGCCAGGGATCCCTGGTCAGTAAGAATTATGAGATTGAACGGACTATTGTT850.10381679389312977No Hit
GGCTTGGGGCCGATCTAGAAGTGGGTAGGGGATGCCCAGTGAATGTGCACTG850.10381679389312977No Hit
GTTGCCGGGAAGTGAAAAAACAAAATTGCCTGAATTGTACTGTATGTAGCTG850.10381679389312977No Hit
AACTTGGGGTGAAGCAGTTTTTCTGAAGCCTGCATTTTGAGTTAGTTTATAG850.10381679389312977No Hit
TCGTACGGGAGGATATTTCTGCTACCCTGAGATTTGTGGCTATATCCTAAAG850.10381679389312977No Hit
AACAATGGGGCTTGGATTTCCATTATTCTGTTTGGTTAGAGAATAAAATTGG850.10381679389312977No Hit
TCCTAGTGGGAATATAGAGAGTTTACATGCTAAGTTCTTAAGTTCATTGAAG840.10259541984732824No Hit
TGACACGGGATGGGGAGAGTGCTTGCCCAACGAAGCCTGGAGTATGCTGGTT840.10259541984732824No Hit
GGTCCTGGGAACATGAAATTGCCTGGTTAGATGGAACAATTCAAACATATCA840.10259541984732824No Hit
GTAAACGGATAGAAATAGGAACTTTCTTTTCATTTCTTATTCATTTATGAAG840.10259541984732824No Hit
CTTAACTGGGGGTTTGTCATGGGGGAACTGCCCTTTAAATTTTAAGTGACAC840.10259541984732824No Hit
TTGCTAGGCTAGAGTGGGGACGACGCTAATGGTGTTGCTTTAGAACCGTCTT840.10259541984732824No Hit
CTCACGGGATAGCAAGTTTTTCAGTTGAGGAAATCCACACCCTACACATTTT830.10137404580152672No Hit
TAGCAAGGGATGAGAATCCCAGGGGAGTCCTAAAAGTGGATGCATTTTCTCT830.10137404580152672No Hit
GCATGGGAAATTATAATTGATTATAATTAGCACTTCCATGAACATTGCATGT830.10137404580152672No Hit
GTAAAAGGGTTCCGAGGTACTGGGAGTTAGGACTTCAACAAACAAGTTTGGG830.10137404580152672No Hit
GCACGCGGGATCTGGAACCAGCCTGATGCATTCCAAGAGGAGGATAGAGGTG830.10137404580152672No Hit
TACACAGGGAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAA830.10137404580152672No Hit
TTGTCAGGGAATTGGCCAGTCTTCTGATCTTTAGTATCTCTTTAGTTCAGTA830.10137404580152672No Hit
GCGTAAGGGACCATCTTCACATGCACATGTTGCAACAAGAGCTTCTGGGAAG830.10137404580152672No Hit
TTTTACGGGATGCTGTGCTGCCTTACGAACCAGTGCTTTTGTACAGGGGAAG830.10137404580152672No Hit
TCTATTGGGACAGACAAGGATTAAAATCACTACTGTTGATTTGCCTTTTGGC830.10137404580152672No Hit
TGCCATGGGGAGGAGTGGGCAGATTTTCTTTGTCTTTTGCTTGCATTTTCTA830.10137404580152672No Hit
GCGTGAGGGGGAAAATAAAAAAGAAACAACCATTTAAGGCTGAGGCATTTTG830.10137404580152672No Hit
CTAAGGGGGCATACATTACTCCACGCTACAAATAATTAACTATCTATTTGAT820.10015267175572519No Hit
GCATTTGGGGCTCAGTAAATCTACATTTTACGTAAGATAAAGTAAGCATGTG820.10015267175572519No Hit
TATACAGGGGTACTCATCCTGAATCCTTATTTTTCTAAAATAGCACCCTTTG820.10015267175572519No Hit
GGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTGCCCCTTTCCAAG820.10015267175572519No Hit
CACCATGGGAACAGAAAATGATCATGTTCTTCTGTTTTGGAAAAGCCTGGCT820.10015267175572519No Hit
TTGCCAGGGAGGCTACACAGCAGGAGGTGAGCAGCCAGCCAGTGAGCAAAGC820.10015267175572519No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)