FastQCFastQC Report
Sat 31 Dec 2022
SRR5848197.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848197.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82189
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGCCGTCT6540.7957269220941976No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTCGTATGC6330.7701760576232829No Hit
AAATGCGGGCATGAGAACTGAAGGAGTACCAGAACTGAATGAATGAAGTACT2060.2506418133813527No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTTATACA1900.2311744880701797No Hit
TCAAATGGGATTTCATAGAAAGTAGCAATTTTTCAAATTGAACCCAGTAAAT1680.2044069157673168No Hit
GAACTAGGGACTAGAAATGAGTTGGAAAGCTATGCCTATTCTCTAAAGAATC1650.20075679227147183No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGTATCTGTCTCTT1560.18980642178393703No Hit
ATGTTTGGGGAGTAAAGTTGAGGCAAACCCTAATGAGCTTTCCCAATGCAAG1450.17642263563250557No Hit
CAGTCAGGGGTCCCCAACTACTGTCAAACATTTACTTTTTAACTCCTCATGA1330.16182214164912578No Hit
AAGCTAGGGATTTGTAAATCTTTTCTCCTGTTTTGTGTGTGGCCATTTTTTT1300.15817201815328086No Hit
GCTTTTGGGCCACCATGCTAATCATCTCCATGCCAGTGTTGTAAGGACCCTT1270.1545218946574359No Hit
AAAACAGGGACCATACAATTCCTAAATTCTGTGAGATCCTTGAAGAAATATT1240.15087177116159098No Hit
GTAGGCGGGACACATGAACGACTGAATTAGAAATGGAAATGCCTGGCACAGC1220.14843835549769435No Hit
CTCGCGGGCGATCTGTACTGGGGTATTAGAATCACATGGATAACTTCTAGAA1200.14600493983379773No Hit
TCTGCAGGGTAAATGAAGACACTTTGTCATGAAGGTTGTAAAGCACCAAATA1190.1447882320018494No Hit
TCTGGCGGGATTCTGAAACTGTTTCCCTTACAGTCAAGTTAAACAAGCAAGC1190.1447882320018494No Hit
AATGCTGGGGTTTGTTACACGAGGTCTGAGAGACAGAGGCAGCGTGTTTGAG1160.14113810850600444No Hit
TATTAGGGGCACCTTAAAGGTCCCAACTCTCAACATTGTTGCATTGATGATT1160.14113810850600444No Hit
ACTAATGGGCTCTAACTTGTGTGCACTACAGTTGTTCACCAGGGCCAGTGAT1140.13870469284210782No Hit
ACGCGTGGGCGATCTTGACCTGGGAGGGATTTGATAAGTGTTCATTACAGTT1130.13748798501015952No Hit
CCAATAGGGATCTTCAAATTCCCAGCAGCTATTGGTTCCTGCTACATAGTAG1110.13505456934626286No Hit
ACGTTTGGGAAGGTGAGTTTCTTGGTAGCTTGAATAAGAATTAGATCATAAA1110.13505456934626286No Hit
CCTAAAGGGATAGTCATTTTAGTCTATGAGACAAAGACTCACTTTGTTTTTA1110.13505456934626286No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACAACGT1090.13262115368236624No Hit
GCCTTGGGGGAGATCTGAAAACAGAGGAGCAGGTAATTAGGGACCCAAAGAA1090.13262115368236624No Hit
ATTAGTGGGTAACATAATAAAAACAGTATTTGAGAAAAGGCAAAAACTTTTT1080.13140444585041794No Hit
TTAGCAGGGATGCTCTTTTGTGCCAACCTGAGGATAATTTTAACAAAATGTA1080.13140444585041794No Hit
TCAACCGGGAAGGTGATAAATTTAAGCCCAATAATTACACTAACTAAAAATG1080.13140444585041794No Hit
CAATTAGGGGGGTGAAACAGTGCGCCTCATGGATCTTCTGGGAGAAGGACTA1060.1289710301865213No Hit
ATATACGGGCCGATCTGCGTGCGGGGAGTGACCCACGGCCATACTCTACCAT1060.1289710301865213No Hit
GTCATGGGGGTTTGTTCCTGTGAGGTGGCTCCAACATATTTTTCAGTGTCTG1060.1289710301865213No Hit
ACTAGTGGGAATTTAAGCATTTTCATATGTGATGAAATTTAATATCTATAAC1050.127754322354573No Hit
GCTATGGGGAGCTACGGCCGGAAGATGGCGGCGGCCGCAGAGTTGTCGCTAC1050.127754322354573No Hit
CTCAGTGGGCTGGCGCCGTTGGCATCGTAGAGTGAACACAACCCAAAAACGA1050.127754322354573No Hit
ACAAATGGGGAATAACAATAAAAAGATAGGAAGTATTTGAAAAGAGCCCAGT1040.1265376145226247No Hit
TACACAGGGAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAA1040.1265376145226247No Hit
TAGCACGGGGTTCCTTGAAAGGAAGGGACTGTGCAAACACAAAGCAATATTC1030.12532090669067636No Hit
GCATTTGGGGCTCAGTAAATCTACATTTTACGTAAGATAAAGTAAGCATGTG1030.12532090669067636No Hit
TCTCAGGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1030.12532090669067636No Hit
TGTATGGGAGGCAGTGGCGGTGCCTTGGTACAACCTGAAAAATGTTAAGGCT1020.12410419885872806No Hit
GGATACGGGCTAGCCCTTTTATCAACTCCTAGAATAGTTAAAGAGAGACACA1020.12410419885872806No Hit
GGCTTGGGGCCGATCTAGAAGTGGGTAGGGGATGCCCAGTGAATGTGCACTG1020.12410419885872806No Hit
TCTTAGGGCTCTTTTTTCTAGCTTTGAAACACAGGTATCTAAATTTAAGAAA1010.12288749102677973No Hit
TTAAATGGGCCTCCCAGCTACTGCAAGCTGGCCTCCTAAGGGGCTGTGCACC1010.12288749102677973No Hit
GGCTTCGGAATGACTGTTGGTTCAGGCATGTTGTACTTTGTAGGGACAAATG1000.12167078319483143No Hit
CAACACGGGCAGAAAGCATACATCTAAGGGAACATTGTCCTTCAAAGTAGAC1000.12167078319483143No Hit
TGCGACGGGGTTGGAGGAGCAGTGGTGACGGGTGTGACAGCAGTAGCCCAGA1000.12167078319483143No Hit
CAATGAGGGTTGTTGGAAGCTTACCAAGAGATTTTGAACTATCCAATTATGA1000.12167078319483143No Hit
TATGCGTGGGACTAAAACTCCATCTCAAAAAGAAAAAATAAACAAAATTCTG1000.12167078319483143No Hit
CTTACTGGGATTGCCACATCTGCCCAATAAACTCTCACTTATCCTTCGTGTC990.1204540753628831No Hit
GACTCTGGGCATGTACTCATTAAGTTTGAAGAACGAGTTAAAGTTACCAAGA990.1204540753628831No Hit
GCCAAGGGGTGCACTGCAGATCTTCAGGAAGGTGATAAAACAATCATGGTTT990.1204540753628831No Hit
GCCACGAGGGGTTCTTTAAGTTCAATGAAGTCTGCCAGGAACATTGGTTGGT990.1204540753628831No Hit
GAACTAGGGATGGGAATTCAAGATGAGATCTGAGTGGGGACACAGCCAAACC990.1204540753628831No Hit
TTTGAGGGGGGCACTCGCGCAGACCTAGCGCGTCCAGGTGGGAGGTTAGTGT980.11923736753093479No Hit
GTGATAGGGGTGTTGCTTCAGCAAGAGTGGCCACGGGGCGAGAATCTTTTCC980.11923736753093479No Hit
TGCCTGGGAAATTTAGAAATTTGAAGCTACGAAATTAAGTTTGAATATGGAA980.11923736753093479No Hit
AGAACAAGGGGACGAGTTGGTGGGTGCAGCGCACCAGCATGGCACATGTATA980.11923736753093479No Hit
GGCCCTGGGAGTTGAATTGAATGTCTATAAGGTCTAAAGGTAGAATGTGAAT980.11923736753093479No Hit
GTAAACGGATAGAAATAGGAACTTTCTTTTCATTTCTTATTCATTTATGAAG980.11923736753093479No Hit
TTTGACGGGCTGGCTGACTGAGAAGATGCATGCCAGAGACTTCACAGTTTCT980.11923736753093479No Hit
ATGACTGGGATCTGGTTGTGACTCTAAGCTCAGTGCTCTCTCCACTACCCCA970.1180206596989865No Hit
TGTCGGCGGGGAAAAATACAGGAAAGCTATGGAGATGTCTATGGAATTTGCA970.1180206596989865No Hit
GAAAAGGGGAACAACAGCTGGTGCCCTGCTTTCAGATACTGGATTGTACTTT970.1180206596989865No Hit
ATTCTAGGGTGCCTATAACATCCTGGCTAACCAGAGGTCCTGAGTCTGTCCA970.1180206596989865No Hit
AGGTCTGGGGGTAATCAAAAACTTGGTTCTTTTAAAAGATTAACAAAATTGA970.1180206596989865No Hit
GTAAATGGGCATCACTTAATCTGAAACAATAATGACTAAATCTTTAATAATG960.11680395186703817No Hit
CGAGGGGTAGGACTTAATCTGTTGAAAAGTGCAGTTACTTCTGGAAATTAAC960.11680395186703817No Hit
ATATACGGGATTGATTACATTTTCAACGTCTCTGTAAAAGCAGTTTATGAGG960.11680395186703817No Hit
TCAGCAGGGGGGCATCGACCGGGACATCGACACCCTCATCCTGAAAGGTATT960.11680395186703817No Hit
ATACAAGGGAAGGTCAGGAGTTCAAGACCAGTGTAGGGAGACCCCCTAAAAC960.11680395186703817No Hit
TGCCCTGGGATAGACTCATTCCGTACACACACATAGACACATTCCATACACA950.11558724403508985No Hit
TCATGTGGGCAAGGAGTTAAATATCTTTGATTCATCAAATAAGAATGCAAAG950.11558724403508985No Hit
TCGTATGGGGCTTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCT950.11558724403508985No Hit
ATGAGGGGGCGCTCTTCCGATCTAGTTAGGGGATTGATATTTACTTATTTTA950.11558724403508985No Hit
CACAATGGGACCCTTCCCTCTTCAGGAAAGACAGGGGGGAGATGTTTTAATT940.11437053620314153No Hit
AGCTTGGGTCTCCTATGTGACTTGTCCATCAATTATTCCAATTCAAAGGTCT940.11437053620314153No Hit
TTCTGTGGGCTTTACTGCATTAATGTCAAATTATTAGAATTGTATTCAAATA940.11437053620314153No Hit
CAATCGGGGACTAAGTATTAAGCATGGACAGCTGTTGTTAGAGTAGCAGATT930.11315382837119323No Hit
GCACTGGGGGGATAGATTTAAGTCATTTGTCTTTTGTGAATAGTGCTATTAA930.11315382837119323No Hit
TGCACAGGGGGCTCTTTCAGCTGAATGATATAAGAGAGCATTTCACTGGAAA930.11315382837119323No Hit
ATTCATGGGGCAGAATTTTCATTTTGACTAGAATCCATTGCTAGAGAGCTAG930.11315382837119323No Hit
GTTATAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA930.11315382837119323No Hit
TTCGACGGGAGGAGGCCAGATGGGGGCCTTGCCTGAAAGACTGGTCCCCTTG930.11315382837119323No Hit
TTACCAGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG930.11315382837119323No Hit
CGGTATGGGAGATTGAACGAATGAATGCCTTTTACATTCAATGAACTATCAT930.11315382837119323No Hit
CTCACGGGATAGCAAGTTTTTCAGTTGAGGAAATCCACACCCTACACATTTT920.1119371205392449No Hit
TTGTCAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA920.1119371205392449No Hit
TGATGCGGGATAGGTTTGATTTATATTGCCTTCATCATTCTGGTTTCAGACG920.1119371205392449No Hit
CTTGCTGGGAGATACATCGTATTCTCACTAAGATGGTTAAAAGACAGGTAAC920.1119371205392449No Hit
CAGAAGGGATTTTTTACAATGTCTTTTGATAAGGTGAATTTTAAAAAATGAT920.1119371205392449No Hit
GTGTTTGGGTGATTTAAAAATGATCCCCAAAATAATACTACCTCACAGGATC920.1119371205392449No Hit
TCGCCGGGAGGTGAGAAAGGAACTTAGACAAAGGGCACAGAGTTGGATGAAA920.1119371205392449No Hit
CTCAGTGGGAACAATGGTCACCTCCAGAAATGGGCTGGGTAAACCAAAGAAT920.1119371205392449No Hit
TGATGGGGGGCCGCCGCCATGGGAGTGCAGGTGGAAACCATCTCCCCAGGAG910.1107204127072966No Hit
TCTAAAGGGCAAGTATTGAGATAAGGGAATATAAATAGTATTATATGTATCA910.1107204127072966No Hit
ACTAATGGGGTGAAAACAAACCAAGATGATTTATAGTAAATCTGTGTTAGAG910.1107204127072966No Hit
TTAATGGGGCAGGAAAGTGAAGGCGAAATCCATTGTCTTCCACCGAAAGAAG900.10950370487534829No Hit
AAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCA900.10950370487534829No Hit
GCCTTGGGGAACCAGCACTCACTCAACTTTAGTTAGCAATGGATGTTCCTTC900.10950370487534829No Hit
GAATATGGGGATAGGTTAAATAATGGTTTCAGCATAGTGTTTGTTTTTTAGA900.10950370487534829No Hit
GCTGCCGGGAGCCCAGTTACTGCACTTGCCACTACCATGCTGTCCATGGAAG900.10950370487534829No Hit
CTCATGGGATATTGAAAAAGAAAGAAAACCACTACTTTTTCTAAACCTTCGG900.10950370487534829No Hit
TTGGCCTGGGATCATAAGCAGACTTGCCTTTTCAGATATTGGTATATTTTAA900.10950370487534829No Hit
TGCATGGGGGTGAAAGGAAAGACGGTGGAGGAAGCCTTGACTATCAAAAACA900.10950370487534829No Hit
CACCATGGGAACAGAAAATGATCATGTTCTTCTGTTTTGGAAAAGCCTGGCT900.10950370487534829No Hit
TTGACTGGGGTCCCTCGGCTGAGAAACCCATTTCTGGATGACAGAGAATGTG890.10828699704339996No Hit
GTATCAGGGAACACATCAGGGAAGAGTTGGCTGAGCTGTCAAAGAAAAGTAG890.10828699704339996No Hit
GCAGTCTGGGGTAATAACAGGCAGGGATTTGTCCCAGGATAACAATGTGTTT890.10828699704339996No Hit
GGATGGGGGGTCTGATATTTTAGTATATAGTAGAACATACTTTTTTTTTCTT890.10828699704339996No Hit
CACATTTGTAGCAGTACCAATTTTCGTGGTTGATTTTTCTCCAGCAGTGAGT890.10828699704339996No Hit
TGTTGATGGGATCTTTTTTATTATTAAAAGTATAGATTAAATTAATAATCAT890.10828699704339996No Hit
GGCGCTGGGATCAAAGATGAAGTATATGTTGCTATGTCAAAAGCCAAAGCAC890.10828699704339996No Hit
ATTATAGGGTCTGTGTACTTGTAGCAGAAGAAATTGGACTAGGAACTTGCCC880.10707028921145166No Hit
GTAAAGGGTCGATCTGAAGCCGGGAGATGTACCTAGTGTGTATTTCTTATCT880.10707028921145166No Hit
ATCGGGGAGCACAAGTAGGGTAACAAGTTTGAAAAACTTATTTTAATTTTAA880.10707028921145166No Hit
ATTACCGGGTGATTTCCACTGGACAGTAGAAAAATATGTGTAAAATAGGGAA880.10707028921145166No Hit
CCTTAGGGGACGTCGACAGTTGCCAGTTACACGCACTAAGATTGATTGGAAC880.10707028921145166No Hit
ACAATTGGGTCTAAATTTTATTTTGACTCCTTTCTTGGCTTTTTCAAACTGG880.10707028921145166No Hit
ACGACTGGGCGACTGTTGGAGGGAACCCACCTGATTTCTGACCTAAAGAAAC880.10707028921145166No Hit
TTCGGTTGGGCGATCTGTAAGAGGGTCCAATGAGCTGCTTTCCTTTCTGGGG870.10585358137950333No Hit
GTGCTAGGGAGAACAACATAATTTACACTGTGATTTATCTTTTTGCTGAGGG870.10585358137950333No Hit
TATTCAGGGCAGAAGGGGACCTGTGGCAGTCACCTGATCCAGATCCGTTATT870.10585358137950333No Hit
AAGCCAGGGATCCCTGGTCAGTAAGAATTATGAGATTGAACGGACTATTGTT870.10585358137950333No Hit
AAGAAAGGGACTGAACACTTAAGGTAAGATACTAATCTCTGTGTATGTGCAC870.10585358137950333No Hit
TTCTTTGGGCGATCTTTGGATGGGCCTTCCTTTCGGCCGGAACCGCCATCTT870.10585358137950333No Hit
ATCGCGGGCATAGAAGTCAAGTTTGCCTCCGAAGCAGAAGATAAAATCAGGG870.10585358137950333No Hit
AGAGACGGGGTGACAAGGCAGGACAAGAGCCTGTTTCGCTTTCCTCCCTGAC860.10463687354755502No Hit
TAGCAAGGGATGAGAATCCCAGGGGAGTCCTAAAAGTGGATGCATTTTCTCT860.10463687354755502No Hit
AAAACTGGGTCTGAAAGCACAAGGTGATACTCATTTTTATGGTCTTCCCATT860.10463687354755502No Hit
CTCCTCGGGAGAGCAGAACTAAATGAAATTGAAACAAACAAACAATACAAAA860.10463687354755502No Hit
TCAATGGGGGTCCAAATAATTTGTATTTGAAACATCTCTATACTTGTTATTC860.10463687354755502No Hit
GTTACTGGGCAGGTCTGACTGACCACCAGTCAGAGGCACTTTATTTGTATCA860.10463687354755502No Hit
TTCACAGGGACTTCAGTGTTACACTTTATCAGATGCCTTCCCTGACCACCCT860.10463687354755502No Hit
TCTCGCAGGGTCGCATATTAAATTATTCAGCAACTATAATGTCCCAAACAGT850.10342016571560672No Hit
GAACTGGGGGCATCAAATTTCATTGACTGGAATGTAACATGTATAAAGTGAG850.10342016571560672No Hit
ACTTAAGGGGTTAATTAAGTTTTCAACATAATTTGAACTCTTGTCTTGGCTT850.10342016571560672No Hit
GGCTCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC850.10342016571560672No Hit
CGTTTCGGGTCTAGAGTATTGAAGACAACCTCCTTCAACATTTTAATTCATA850.10342016571560672No Hit
ACGCACGGGTGGTCTGTGGGGTTTCGGGTTCGGGGTTTCCTGGTGGGCGTCA850.10342016571560672No Hit
GGAGGGGCAAGACTTGGGAAATGCAGTGAGCACCCGAGGAAAGGAAAGTGGT850.10342016571560672No Hit
GATACAGGGAGGTTTTTGCATTGATGTGTCAATTTTTTTGTTTTGTCCCAAG850.10342016571560672No Hit
GCGTGAGGGGGAAAATAAAAAAGAAACAACCATTTAAGGCTGAGGCATTTTG850.10342016571560672No Hit
AGTTCCGGGGCTGCTTTTAGGATGCTTTCTTTATCCTTTACTTTGGGGAGTT840.1022034578836584No Hit
GCTCACGAGGGGAGAAGGGTCATGAGGATGAACTGTGCAGTCACCTGGCAGG840.1022034578836584No Hit
TGGACTGGGGGCAGTGCATGGCTCAGAATAGGAATGAAGTAAGAAGTGATGG840.1022034578836584No Hit
TACTCGGGGAGCCAGAAAGATGCCCTAGTTGTGATCAAAGGTAACTCGAGGT840.1022034578836584No Hit
GGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTGCCCCTTTCCAAG840.1022034578836584No Hit
GTCACAGGGGCTTTCTTTGCTGCGTCTACTGCGAGAATGAAGACTATTCTCA840.1022034578836584No Hit
TTTATGGGGTAACCAGTACTTTTAAACTTAGGAAGTCCAGGGAAGGAAGTAA840.1022034578836584No Hit
ATACTGGGGCATTTTAATATCTTTCGAATTTCTAGGAAACATTCTATTGATT830.10098675005171008No Hit
GCTTGCGGGAAGAGAAAAATCATTAAACATGGTTTCCTTAGCTTCTACTGGC830.10098675005171008No Hit
TGTTGTGGGAGGTCCTGGCACCTCTGCTGAGTGCCCAGCCTGAGATGACACA830.10098675005171008No Hit
ATCATGGGTTGCAGATGTTCAATACATTTGCATTAATAATTTATTTTAACTT830.10098675005171008No Hit
GAGTCAGGGGGGCAGCTACAAGCTGCAGACTTCAATCTACCACACATACTAA830.10098675005171008No Hit
GATTCTGGGGAAGAAAGATATTGCCACAATCTCTGGATGGTTTTCCAGGGTT830.10098675005171008No Hit
GCGTAAGGGACCATCTTCACATGCACATGTTGCAACAAGAGCTTCTGGGAAG830.10098675005171008No Hit
ACATTGGGGCGATCTACTGCTGGGAAGCTAAGAACATAAAGTACATTGATTT830.10098675005171008No Hit
GTCATAGGGTGGCCATGGGGAGAAGACACATGGTGTGTTCCTTGATGGTTTA830.10098675005171008No Hit
TTTTACGGGATGCTGTGCTGCCTTACGAACCAGTGCTTTTGTACAGGGGAAG830.10098675005171008No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)