FastQCFastQC Report
Sat 31 Dec 2022
SRR5848174.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848174.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144291
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT4740.3285028172235274No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC4220.29246453347748647No Hit
GAAGCGGGGACCGCAACTCGTGACCAGGGCTGGCTGGGAGGGCAACGCAGGG1640.11365920258366773No Hit
AACTGGGGCAGCCGCGGGGAGCGCCGCGCCATCGAGAAGCTCGCGGTGGAAG1620.11227311474728152No Hit
GCGTAGGGGGCAATGACAGGGCCTGTGACTTCCTCCTCTCGCTCCAGCTGCA1450.1004913681379989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)