FastQCFastQC Report
Sat 31 Dec 2022
SRR5848172.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848172.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143970
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC4360.30284086962561646No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT4300.2986733347225116No Hit
AACTGGGGCAGCCGCGGGGAGCGCCGCGCCATCGAGAAGCTCGCGGTGGAAG1650.11460720983538238No Hit
GAAGCGGGGACCGCAACTCGTGACCAGGGCTGGCTGGGAGGGCAACGCAGGG1620.11252344238382997No Hit
AAAGAGGTCTGCTAGCGGGCACATTTAAAGCAGTGGTTAGAGAGAAATTTAT1460.10141001597555047No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)