FastQCFastQC Report
Sat 31 Dec 2022
SRR5848168.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848168.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61825
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT5440.8799029518803073No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC4820.779619894864537No Hit
CGAACAGGGCAATAAATATTAAATTTAATTCAAATTGGATCCCAGTTATAAA1810.29276182773958753No Hit
TAAACAGGGGGGGAAATACACAAAAGGACTGAAAACGGGCTCAAACAGATGT1520.24585523655479175No Hit
ATCTTTGGGTCTTGCGGTGGGGATTACACACACACAGACACACACACATACA1070.17306914678528104No Hit
TAAGCTGGGTATAAGAAGAAAAAAACTCGTTATACTTTCCATTTCCAAAATA970.15689446016983422No Hit
GTCCAAGGGGCCCAGACACCTCATTGTACTTGAAAACTGGAACAGCTTGGGA870.1407197735543874No Hit
GTAAGGGGATGAAAGAATGACAGAAAGAATGAATGGACACATGAACGACTGA780.12616255560048523No Hit
GAGGTGGGTGGTTAATGAGTACAAAAATATAGTTAGATAGAATGAATAAATC770.12454508693894056No Hit
CATGAGGGACCTTCTCAGAAGGCACCTCTCTCTGAGCCCTCCGCACTCCTGT760.12292761827739587No Hit
CATGTTGGGAGTGTTGATTCTAAAAATATTATTCATTAGTATATATCAATGC750.1213101496158512No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCC750.1213101496158512No Hit
TTCCATGGGAGTCCTAAAGTGTACTTCATGAAGCAGACCATTGGGAATTCCT740.1196926809543065No Hit
CTCAGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC740.1196926809543065No Hit
TGTCATGGGACAACATGGCTAAAGCAAAAATGAAGAACAAGCAACTTCCTAC730.11807521229276184No Hit
ATCGGGGATCATCACTTCCAGCACTACAAAATTATGCCATGCATGTTATTTA730.11807521229276184No Hit
GCGTTTGGGGAAACTGAATCAGTACAATGGAACATGAATTTTCAATAAAGGA710.11484027496967246No Hit
GATGACGGGACTCTCTGAAATCACATAAATGACAACCAGTTTACTATTTACA700.11322280630812777No Hit
TTACAGGGTATAAAAATTAGCCAGGCCTGGTAATCTCAGCTACTCAGGAAGC700.11322280630812777No Hit
TTCAGCGGGATAAAACTAGAACCTAGAAAGCCTCAGAGAATGTGATTTTATG690.1116053376465831No Hit
TGCACAGGGATATTACGTGCTTTCATGAAAATTTAGAGTATTTTTACTAGTC690.1116053376465831No Hit
TGGTAGGGTTGGAGAATAGATGTTGAAATGTTTCCCCACACAATTAAAATTC680.10998786898503841No Hit
TTATATGGGAGTGATTCGGAAGATGATTCAGAATTTGATGAAGTAGATTGGT680.10998786898503841No Hit
ATTTCTGGGCTTGGAATAAATAGCAGGTTATTACTTTGTCTACTATTATCTT680.10998786898503841No Hit
GCAGTAGGGACTTTGGATGTAAACACTATCAAATTTTCATTGGGTGAGTTCT670.10837040032349372No Hit
TCGCGCGGGGGAAATGCTGTGGGCTTTCCATGAATCCGTTGTAATAAAACAT670.10837040032349372No Hit
TGCTAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC660.10675293166194905No Hit
ATACGGGGACAGCTGAGAGTGAAGCAAAAGTAAAAACCAAAGTTCGCTTTGA650.10513546300040437No Hit
ACATTTGGGTGGGAACAGAAAAGAGGAAATGGAATAAATATGAAGCAAAAAT650.10513546300040437No Hit
CACGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA650.10513546300040437No Hit
AATTGCGGGAAGTCATGAATGGAGCCAGAATCACATAGGATTCCGATATTGG650.10513546300040437No Hit
TAGCCTGGGGACGCTCTTCCGATCTTGAACAGGGTTTCTCATTATAGTTAAT650.10513546300040437No Hit
ACCCATGGGGCAAGAAAGATGAAGAGGTAAAGGGCATTGAAGCAGAAATGTA650.10513546300040437No Hit
CAACGGGGCACTGCCAATATGCAACTGATCCCGCTTTTATTAATTTTTTGAA650.10513546300040437No Hit
ATGCTTGGGGGGCGGTGGCGGCTGTGGCAGCGGGAGCAGCTGCGCCGCCAGC640.10351799433885968No Hit
ACATTGGGGAGTCTTTCTTTGATTTTGAGATCTGTGGCCTAAAAGAAAAATG640.10351799433885968No Hit
AACACGTGCCTCGTAAAGGTCCCCAATGTAATGACTGAGCAGAAAATCAATC640.10351799433885968No Hit
CGTCAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC640.10351799433885968No Hit
TAGTTAGGGTGGTAGTGTGCGCCTGTAACCCCAGCTACTCAAGAGGCTGAGG640.10351799433885968No Hit
GCATGCGGGAACGAATGCACTGAGTCTCATTTCTTTTTGAAAATGGGTACTT640.10351799433885968No Hit
TCAAAGGGAACAAAAATCTAACCACTTTAGACAGATGAGACCCAGGGGTATA640.10351799433885968No Hit
CGTCAAGGGGTGGCTACCAAATGGAACAGTGCAGGCTAGCCTAATCAGATAA630.101900525677315No Hit
CAGCAACGGGGAATGAGAGAGATCCGGTTCTTTAATAAGAGGAACTTGAGCC630.101900525677315No Hit
AACATCGGGGGGGCCTAATTTTTCTGTTGGTGAAATTGGAGAGCTGCAGTGA630.101900525677315No Hit
TAACAAGGGGCAGTTTAACTTTTAATCCTTACCAAACATATGTTATTCCTTT630.101900525677315No Hit
TTTACGGGGTCAGTGAGATTGTGTGCCTAGCACAGTGCCTGACTCCCAGTAG620.10028305701577032No Hit
TGTCTAGGGCAATCTATACATTCAATGCAATCTCTACCAAAATACCAATGAC620.10028305701577032No Hit
ACCGCTGGGTGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACAT620.10028305701577032No Hit
CAAAGTAGGATAGCTAATGCATGCTGGGCTTAAAACCTAGGTGATGGGTTGA620.10028305701577032No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)