FastQCFastQC Report
Sat 31 Dec 2022
SRR5848167.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848167.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62056
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT5440.8766275622018822No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC5030.8105582054918138No Hit
CGAACAGGGCAATAAATATTAAATTTAATTCAAATTGGATCCCAGTTATAAA1860.2997292767822612No Hit
TAAACAGGGGGGGAAATACACAAAAGGACTGAAAACGGGCTCAAACAGATGT1540.24816294959391516No Hit
ATCTTTGGGTCTTGCGGTGGGGATTACACACACACAGACACACACACATACA1220.19659662240556916No Hit
TAAGCTGGGTATAAGAAGAAAAAAACTCGTTATACTTTCCATTTCCAAAATA990.15953332473894546No Hit
TGCTAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC870.14019595204331572No Hit
CTCAGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC860.1385845043186799No Hit
AACATCGGGGGGGCCTAATTTTTCTGTTGGTGAAATTGGAGAGCTGCAGTGA850.1369730565940441No Hit
GTAAGGGGATGAAAGAATGACAGAAAGAATGAATGGACACATGAACGACTGA820.13213871342013664No Hit
TAGCCTGGGGACGCTCTTCCGATCTTGAACAGGGTTTCTCATTATAGTTAAT810.13052726569550083No Hit
CGACGGGGAGACAACATGTTCTCAAAGCAATTCAAACTGAAACAGGAAATAA780.1256929225215934No Hit
TTCCATGGGAGTCCTAAAGTGTACTTCATGAAGCAGACCATTGGGAATTCCT770.12408147479695758No Hit
GCGATGGGGTAGTTTGCAAAAATTTTCTCCCATTCTGTAGGTTGTCTGTTTA770.12408147479695758No Hit
TGAACGGGATTTTGGAAAGAGTTGATTGACCCAAGACTGATTATTGAATCTC750.12085857934768596No Hit
GCGTTTGGGGAAACTGAATCAGTACAATGGAACATGAATTTTCAATAAAGGA740.11924713162305015No Hit
AATTGCGGGAAGTCATGAATGGAGCCAGAATCACATAGGATTCCGATATTGG730.11763568389841433No Hit
ATCGGGGATCATCACTTCCAGCACTACAAAATTATGCCATGCATGTTATTTA730.11763568389841433No Hit
CGACGAGGGCCTCTGCCCCTTCTGGCAACATGCACATTCCTGTCTTCTGCCT730.11763568389841433No Hit
GCTTCGGGGAATACAGAAATATCTATTCTTGCCTATCCATGATGTACAGCCA710.11441278844914271No Hit
GCATGCGGGAACGAATGCACTGAGTCTCATTTCTTTTTGAAAATGGGTACTT690.11118989299987109No Hit
TCGCGCGGGGGAAATGCTGTGGGCTTTCCATGAATCCGTTGTAATAAAACAT690.11118989299987109No Hit
CATATTGGGCTTGTCATTGAGTGTTTACTATATGTTTAGCACTAGTCTGAGT680.10957844527523528No Hit
TGGTAGGGTTGGAGAATAGATGTTGAAATGTTTCCCCACACAATTAAAATTC670.10796699755059946No Hit
ACATTGGGGAGTCTTTCTTTGATTTTGAGATCTGTGGCCTAAAAGAAAAATG670.10796699755059946No Hit
CAGCAACGGGGAATGAGAGAGATCCGGTTCTTTAATAAGAGGAACTTGAGCC670.10796699755059946No Hit
ATAACTGGGAGGGGCCATCACCCTGAACAACCTTCTCCTGCGGAAGGACATG670.10796699755059946No Hit
CGTCAAGGGGTGGCTACCAAATGGAACAGTGCAGGCTAGCCTAATCAGATAA660.10635554982596365No Hit
CATGTTGGGAGTGTTGATTCTAAAAATATTATTCATTAGTATATATCAATGC660.10635554982596365No Hit
TGTCATGGGACAACATGGCTAAAGCAAAAATGAAGAACAAGCAACTTCCTAC660.10635554982596365No Hit
ATTCCAGGGTCACCAGGAGACATACTATTTCACCTCATTATCCATCCATGGA660.10635554982596365No Hit
GAACGCGGGGTCCCTCTGCTTCAGAGACATATACTACGCAGGCGCAGGGTCA660.10635554982596365No Hit
ATTTAAGGGGATGGTGATGTCAATTTCCAAAGCAGCTTCTCCAGCCAAAATC660.10635554982596365No Hit
CTTTGTGGGAAGCAAATTGATCCTAAGAATTTGGTAAAAATAATAATTTACT650.10474410210132783No Hit
AGTAATGGGAACCATGGAAGCTAAGTTTGGCCTGCTTTGCTTTTTAGTCTCC640.10313265437669202No Hit
CATGAGGGACCTTCTCAGAAGGCACCTCTCTCTGAGCCCTCCGCACTCCTGT640.10313265437669202No Hit
ATCCACGGGGAATAAGGTTTATTTGTTTATTGTTTTCTGTGTGGAGTCATGG640.10313265437669202No Hit
TTCAGCGGGATAAAACTAGAACCTAGAAAGCCTCAGAGAATGTGATTTTATG640.10313265437669202No Hit
GCCTTTGGGATTACTTAGCATAATGCTTCAAGGTGCATCTTTGTTGTGGCAT640.10313265437669202No Hit
CGGTACGGGAGGAATGGAAAAAGATACTCCATGCAAATAGGAACCAAAAAGA640.10313265437669202No Hit
CCAGTAGGGAGAATGGGCTCTGCCCAGATGCTGCTGTGCGACTAGAGTAACG640.10313265437669202No Hit
ACCCATGGGGCAAGAAAGATGAAGAGGTAAAGGGCATTGAAGCAGAAATGTA640.10313265437669202No Hit
AGCACCGGGAAGCAAATAAAAGCTGGCCACCCCAGCCAGCAGCAGCAACCTG640.10313265437669202No Hit
TCGTGGGGAACTAGGTGCCGATGAGACTGCTGTAGCCAGTATTTTGGAACGC630.1015212066520562No Hit
TGGCGAGGGAGTTCATCTTAGCCAGAACTGTAGGCATTTCCCACCCTTACTC630.1015212066520562No Hit
TCAACTGGGATTGCAATTATTTTCTGACTTTCTTTCTTTTGAGTTACTATAT630.1015212066520562No Hit
TTGACTGGGAATTCCTGATTTCTCAGGCACCGATTAGATTTTGAGTGTGTTG630.1015212066520562No Hit
TAAATGGGGGTCTCTTAGTGTCCATCCTTGAGTAATAGAATTTTGTTTTAGA630.1015212066520562No Hit
TAGCAGGGGGCCTTAACAGGATGGGATCGAGGGTCCCCATGGGGTGGCTCAG630.1015212066520562No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)