FastQCFastQC Report
Sat 31 Dec 2022
SRR5848165.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848165.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92690
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC4780.5156974862444709No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT3020.32581724026324305No Hit
TTGCTCGGGAAAGAGCTCATTGTCAGAGTTTACGCAACTGTTTGAGTTGCAG2640.2848203689718416No Hit
GGCATGGGTACAGCCAAATACTTACAACCAAATGATCTTTGACAAAGTATAG1610.17369727047146402No Hit
AATAAGGGATTGGTTTGGTATTTTTTAATTTTCTATTTGTCAGTGCTCTTCA1360.1467256446218578No Hit
AGCTGCGGGGGCCCCCGATGGCCGCACGTTTGTGTCAGGCGCCTGTGATGCC1270.13701585931599958No Hit
GTACTGGGGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATTGA1220.13162153414607833No Hit
GCTTACGGGAATCACCAAGGGCTTACTATGCATCAAGGTATTCTGGGGCATA1210.13054266911209408No Hit
AATTATGGGCTGCTCATGGGATTCCTGGTGAAGTTGTGAATGGAGCTAGGAG1160.12514834394217283No Hit
GGCACTGGGTCTCAGAACCCAGGGAGAAAACCCAATGCCACCTTTCTAAGGG1150.12406947890818859No Hit
TTTCCAGGGATCCTCACTTTGACTCTGACAAAGAACAGAAATGCTAGGGGGT1140.12299061387420435No Hit
TTATCCGGGGAGCAAACACAGCTTCCAAACCCAGGGCTTGCGCTTGCCTTTG1130.12191174884022009No Hit
CTGTACACGTGCGGGAGGAAGGTGTGGTGCTGGAAGCTGTGGCATGGCTAGC1120.12083288380623584No Hit
CTGACAAGGGGAACTTATATATTGAACTAAATTTTTGCCAAATTTGGCTTAT1120.12083288380623584No Hit
CGGCTAGGGGACACCAGAAGTGAGCAGGAGTATCTATTCATATAGCAGACAA1110.11975401877225159No Hit
TGAGAGGGGAATATTGTATTGGCAAAGGAACAGGTAAATACATCATTAGAAC1100.11867515373826736No Hit
GCGAAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1080.11651742367029885No Hit
CAAAGGTGGGCTTCCAAGTATCTTTCAGAACCATAAACTATTAATACACTAT1080.11651742367029885No Hit
ACCGGCGGGATGTTCAGAGATTGCAGTAAAGACAGGCATAAGAAATTATAAA1050.11328082856834609No Hit
TATCCAGGGTGGCCTGGGCAAGAGACTCTATCTCAAAAACAATTTTTTTTAA1050.11328082856834609No Hit
TCATTGGGGCAGGGAGCCCCAGACTCTGGTAAATGCTCTGCTTCCTCCTGCC1040.11220196353436186No Hit
AGAAAAGAGAAGAGAATATTGAACACGGCAAATAGTTGGAAAGTCATACGGA1040.11220196353436186No Hit
TTAGATGGGGACTGCGGCACAGAGCCGCGGCTTGCTTTCAGGACACGGGTCG1030.1111230985003776No Hit
TGTGGTGGGATCAAAATGAAAAAAAGTCTCAAGTTAATGACCTACATTTTTA1030.1111230985003776No Hit
ATAAATGGGAGATGAAATACATTTCTAGTAGTACCACCAGCATATATTCTAC1020.11004423346639336No Hit
GATATCGGGATGACACTGCTTTGTGCCAGACATAGAGCTTTGCACTGAGGTC1020.11004423346639336No Hit
TTTCTAGGGAAGAGAGCAGGGTTAGCTATAGTAATATCAGAGAAAATAGACT1010.1089653684324091No Hit
ATGCACGGGAAGGGCAATCACTCTTAAAAAATCATTACACTATGTTCTCTCC1010.1089653684324091No Hit
TACATCGGGATTCTGTGGAGAAGAAGGGCGGGAAGAACTTCCTTTCAGGAGG1000.10788650339842486No Hit
TTCGCAGGGGACTACAATAAAGCATTTTAAAATTAAGGTAACATTGGCTTTT990.1068076383644406No Hit
TACTTAGGGCGATCTTGAAGCGGGAGATATTCAAAATTTCCTACAAACTATA990.1068076383644406No Hit
GCGCGGGGGGCGTTTCCTCCTCTCCTCCCTGATCAGGAGTCATTTCCTGCAT980.10572877333045637No Hit
CTGCTTGGGGACCCTAATTGACCATATATGACCAGGAAACACTTCTGAGTTT970.1046499082964721No Hit
AGCCGCGGGCTTGTTTCTGACCCTAATGTTGAAGAACCGTCAAAGTTACTAC970.1046499082964721No Hit
ACAGCAGGGAAATGGGATTTGTATGTGCTTTTCCTTCCTACATTTTCATTCC970.1046499082964721No Hit
TAGCAAGGGAAGAGAACCGAGAGGCACAAATGGCTGCCAAACTGGAACGTTT970.1046499082964721No Hit
TATTGCGGGCAAGGTGTGACTGTAGTGATAAGCAATTAAGAGAAGGCTGGTA960.10357104326248787No Hit
TACAAAGGGAACCTAGCACGAGCTGAGTTGAAAGATAATTCAAAAATGTCTT960.10357104326248787No Hit
TGGCCTGGGTCTTCCGATCTGCGTGTGGGCCAGATTGGCAATGCCTGCTGGG950.10249217822850361No Hit
AACGGGGATCAATTGACAGTTTGACACATTCTTAGAGCTCATTGTGAACTCT950.10249217822850361No Hit
CTAATGGGGACACCCAGCTAGTTTTTGTATTTTTAGTAGAGACAGGGTTTCA940.10141331319451936No Hit
TGTTCAGGGGAGCGTAGTGTACTAACATGCATATCATTCACCCCTAGATGAA940.10141331319451936No Hit
ATAATTGGGGCAGGACTTTGTTTTTAATGTGCAACTATTATGGGGTTATTTT940.10141331319451936No Hit
TCTTCTGGGAAGGTCACCATGAGGGAAGAGTTCTATGACAAACTCATAGATG940.10141331319451936No Hit
CTTGCTGGGGTGACACTAACTAGGTTTTCATCATTTATGGTATAAGAAGTGC930.1003344481605351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)