FastQCFastQC Report
Sat 31 Dec 2022
SRR5848152.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848152.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102149
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT4930.4826283174578312No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC4160.4072482354208069No Hit
AGTGTCGGGCGGAGTGCTTAAAAGAGCTGCAGACAATTTAGCAGCTAGTAAC1260.1233492251514944No Hit
GCCGTTGGGAAGAGAATGATTTATCCTGTGGCATTCCTAAAATCTATGTAAT1140.1116016798989711No Hit
GCATGCGGGCTACAAATAACTTGTGTGAATGATAAGAACATAGCTTTAAAGA1130.11062271779459416No Hit
TGCTATGGGGGGGCTTGAGAAGAATGAGGAGTGAAGATGATGAAATTATTTA1130.11062271779459416No Hit
AGCTCCGGGCTCTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT1090.10670686937708641No Hit
CACAGGGACATCACAGAAAACAGACTTTAAATCAACAGCAGTAATAAAGACA1070.10474894516833252No Hit
TTGTAAGGGCTGGTTGGTAACGATTATACAGTCAGGGCTTTATCTGCTTGCA1050.10279102095957866No Hit
TTCGCCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1050.10279102095957866No Hit
TCCACTGGGAATGAAACTCCATCTCAAAAAATAAATAAATAAAAACATGGAG1040.10181205885520173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)