FastQCFastQC Report
Sat 31 Dec 2022
SRR5848130.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848130.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179697
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT7620.42404714602914906No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC7540.41959520748816065No Hit
CTCTCCGGGGGCAGAAAGAACTTACATGGAAGTCACCAGAAAATGGTTCATG2100.1168633867009466No Hit
GAATGTGGGGCAATTAAATTTGAAAATGTTGAAGAAATGAATTATTTCATAG1950.10851600193659326No Hit
ACGCCAGGGGGGCCTTATCTTTTTACTTTCTTGATGGTGTCTTTTGAAGTGC1800.10016861717223995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)