FastQCFastQC Report
Sat 31 Dec 2022
SRR5848105.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848105.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences160391
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT11570.7213621711941444No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC10600.6608849623732005No Hit
TAACGCGGGTGCCTTTCTCAGAATCACATCCTCATCAGCCACTTGACAACAC2140.1334239452338348No Hit
AACGCTGGGATGTGTTGAAAATATATGTTGTGAGAATTTATCATTGTACAGC2140.1334239452338348No Hit
CATCAGGGGCAGAGCGAGACTCCATCTCAAAAAAGTAAAATACAATAAAATG2020.1259422286786665No Hit
TTTGGTGGGCCGATCTGTCTTGGGGATTGACGTTTTCAGTTTTCATGAATGT1950.121577894021485No Hit
TAATCAGGGTACCAAGAGTTTGGCCAGTGTGTGGGAGACTTGAACACCCCCC1940.12095441764188763No Hit
TCTGAGGGGCACACAGATAAGTGGCTCTTACCCAGCTCTCAGTGACTCCCCC1910.11908398850309557No Hit
GCTGGGAGATCACCTAACAAAAAAAGATCTCCGTGTCCATTTAAAAATGGTG1900.11846051212349819No Hit
AGCTGAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1890.11783703574390085No Hit
CGTTGTGGGTTGACTAGCAAGACATCCTACACATACTGCTTTTCATGAGGTA1880.11721355936430349No Hit
CTTACTGGGTGAAAAATTTAGGAGTAAATTTGACAAAATATGTGTAAACCTG1840.11471965384591404No Hit
ACGCTTGGGCTTTTGAGAATAGTCAAGGACATAGAAGCAGTACATTCTGAAC1840.11471965384591404No Hit
GGCGAGGGGGGCGGCCGCGGAGTATCCTGGAGCTGCAGACAGTGCGGGCCTG1830.1140961774663167No Hit
GACTAGGGCGATCTGCGTAGGGACTGTTGGATGTGTCCATTGTCGCCAGTTT1810.11284922470712197No Hit
TTTAAAGGGGATGTGAAAAAGGAAAAAGGAAAGGTAATAAACAAACAACCAA1800.11222574832752462No Hit
AAGTCAGGGGGCCCCGCCGCAGCTCCAGCTGGCCGGCTTGGTCCTGCGGTCC1790.11160227194792725No Hit
GTTTCCGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1780.11097879556832989No Hit
TTAGCCGGGATTTAAAATTTGGCAAATAATGCATATAATGAAATCAATATTG1760.10973184280913517No Hit
TTTGCCGGGGAGAGTGGAGCGGCCGCCGGAGATGCCTGACGCATCTGTCTGA1750.1091083664295378No Hit
TAGACGGGGATTACAGAAAAAAATCTGAACTGAGAAAGGAGCTCTGAATTTA1750.1091083664295378No Hit
ATAGTCGGGTAAGGAAGAAGGAAAGAATGTCCTGTCTCACCACTCCTATTCA1730.1078614136703431No Hit
ACTCATGGGATCTCTGTTTTTCTTAACTCAGAACTCAGGCTAAAAGAGTGAT1720.10723793729074574No Hit
GAAAGCGGGGGGGTACTTAAGGCGCGGCCACCGCGGCTGCGGCAGTGCGCCC1720.10723793729074574No Hit
AGTTGCGGGTTGACATGTCTTCCGTGGTGGGGGCAGGGGAAGGCAGAGCCCA1710.10661446091114839No Hit
CGCTCTGGGACCAGTTGCCTCTCCAGCAGCCCTTGGAAGCACTGCTACAGCA1700.10599098453155102No Hit
ATTGCGGGGGTGTATCAGCCATTATTCTTTTCATTGTTGACCAGTGCTTCCA1680.10474403177235632No Hit
CACAAAGGGGTTGCGTTTTTCCTTGTAGCATTTGGAAATGATTTACTGGAAT1680.10474403177235632No Hit
CTTCGAGCGGCACATAAACATGGTCATTACCTAATAGAGTAGAATTAGAATT1680.10474403177235632No Hit
CTCTTGGGGATCCCATGCTCATGGATGGGTAGAATCAATATTGTGAAAATGA1670.10412055539275894No Hit
TGTTCTGGGATAGAAGATTGTAATTGTAGAGAAATATTTCTCTTAGAAATAA1660.10349707901316157No Hit
AATTGCGGGCATACAGGAGAGAAGCCTTATCGATGCATTGAATGTGGGAAAG1660.10349707901316157No Hit
TAGATAGGGGCGAGAGATGTGCAAGCAGGGATACCGGGATGGCCTGCGCTTT1660.10349707901316157No Hit
TAAAGCGGGAGCTGGGATTACAGCCAGTGCCACTGTTCCCGGCTCAAATAAT1650.10287360263356424No Hit
TTACAGGGGATAAAATGCTGAGGAGAGAAGTTCAGAAGAAAAGAGGGAGGGT1650.10287360263356424No Hit
TACAATGGGGAGATCGACTTACCAGGAGTGGGAATTAGCTATCCAACGTAAG1650.10287360263356424No Hit
CAAAAAGGGGTATTATGCATTGGAAAGGTATTTTTTTTAAGTTCTGTTGGCT1640.10225012625396687No Hit
GGGCAAGGGGTCGGTGAAGCGGCAGTGGCGGCGGCGGCGGCGGCTCGGCAGG1640.10225012625396687No Hit
TCTAATGGGGTACTGAAAGCCTCTTCAAATTTTCTGTCTGTCGAGTTATTTT1640.10225012625396687No Hit
ACCGCTGGGGCTTGTATCATGGGATACTTTGCTGGAAAACTTTCTTATGTGA1630.1016266498743695No Hit
ATGTAAGGGAGCTGCCCTCTACGATCAGGTGCAGGGGCTGCCCAGGACAAAG1630.1016266498743695No Hit
TATAGAGGGAGACCTCTTGGCTGTTAACTGAAACTGAACTTGCTCACATCAT1610.10037969711517479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)