FastQCFastQC Report
Sat 31 Dec 2022
SRR5848104.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848104.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences160801
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGCCGTCT11960.7437764690518094No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTTGTCCCATCTCGTATGC9900.6156678130111132No Hit
CATCAGGGGCAGAGCGAGACTCCATCTCAAAAAAGTAAAATACAATAAAATG2350.1461433697551632No Hit
TAACGCGGGTGCCTTTCTCAGAATCACATCCTCATCAGCCACTTGACAACAC2270.14116827631668957No Hit
GACTAGGGCGATCTGCGTAGGGACTGTTGGATGTGTCCATTGTCGCCAGTTT2190.1361931828782159No Hit
TCTGAGGGGCACACAGATAAGTGGCTCTTACCCAGCTCTCAGTGACTCCCCC2180.13557129619840674No Hit
AAGTCAGGGGGCCCCGCCGCAGCTCCAGCTGGCCGGCTTGGTCCTGCGGTCC2170.13494940951859752No Hit
ACGCTTGGGCTTTTGAGAATAGTCAAGGACATAGAAGCAGTACATTCTGAAC2120.13183997611955148No Hit
TTTAAAGGGGATGTGAAAAAGGAAAAAGGAAAGGTAATAAACAAACAACCAA2050.12748676936088704No Hit
AACGCTGGGATGTGTTGAAAATATATGTTGTGAGAATTTATCATTGTACAGC2000.12437733596184103No Hit
CGTTGTGGGTTGACTAGCAAGACATCCTACACATACTGCTTTTCATGAGGTA1980.12313356260222263No Hit
ACGCTTGGGGAATTGTATTTACAAATATATTTTGTTGAGTGGCTTGGGTGCA1920.11940224252336738No Hit
TTTGCCGGGGAGAGTGGAGCGGCCGCCGGAGATGCCTGACGCATCTGTCTGA1910.1187803558435582No Hit
AGCTGAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1900.11815846916374897No Hit
GTTTCCGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1880.11691469580413057No Hit
CGCTCTGGGACCAGTTGCCTCTCCAGCAGCCCTTGGAAGCACTGCTACAGCA1860.11567092244451217No Hit
TGTTCTGGGATAGAAGATTGTAATTGTAGAGAAATATTTCTCTTAGAAATAA1860.11567092244451217No Hit
AGTTGCGGGTTGACATGTCTTCCGTGGTGGGGGCAGGGGAAGGCAGAGCCCA1830.11380526240508454No Hit
TGTAACGGGTACCACATTTAAAAAAAACTAGTCTTCTATTGATGGACCTTTA1820.11318337572527534No Hit
TAGACGGGGATTACAGAAAAAAATCTGAACTGAGAAAGGAGCTCTGAATTTA1810.11256148904546615No Hit
CTTTTAGGGCACTAAAACTGCACAACAACATGGAAACTGAACAACCTGCTCC1800.11193960236565692No Hit
CTTCGAGCGGCACATAAACATGGTCATTACCTAATAGAGTAGAATTAGAATT1780.11069582900603851No Hit
CACTTTGGGGCAGCACATGCTCCTTGCGTAAAACCACATTAAATAATTCCAG1760.10945205564642012No Hit
GCGCGAGGGAAGTAGGATAAAGTTTTTTTTTCTTTTTACAAACGTACAGTAA1760.10945205564642012No Hit
ACCGCTGGGGCTTGTATCATGGGATACTTTGCTGGAAAACTTTCTTATGTGA1740.10820828228680171No Hit
GGCCACGGGTCTGTATTTTTGTTGAAGATTGTATTCATTTAAATTTCTTCTA1730.10758639560699249No Hit
TCTAATGGGGTACTGAAAGCCTCTTCAAATTTTCTGTCTGTCGAGTTATTTT1720.10696450892718329No Hit
CTAAAAGGGAAGGAAACAAATGAGATAAGACCTATGATAATACCAACTTTCT1690.10509884888775568No Hit
AGCACAGGGCCTGGCCTCCAACTCCAGAATTGGAGCCCTCCAGACATTACAA1690.10509884888775568No Hit
GGCGAGGGGGGCGGCCGCGGAGTATCCTGGAGCTGCAGACAGTGCGGGCCTG1690.10509884888775568No Hit
ACACAAGGGACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCT1680.10447696220794646No Hit
ACTCATGGGATCTCTGTTTTTCTTAACTCAGAACTCAGGCTAAAAGAGTGAT1680.10447696220794646No Hit
ACTGCCGGGGAGTGACAAATTGCAGGAGATTTAATGTATAAAATTTCTAGGA1670.10385507552813726No Hit
AGGTGAGGGGTTCCGACCCCTTTCCCAGCCCACAGGGCTTGAAGTGAAGGAA1660.10323318884832805No Hit
GTTAAGGGGACCATCTTTGGTGGAAAAACATGTGGCTTAGAAAGCAAGTCTA1660.10323318884832805No Hit
AAGCCCGGGGCAGAAGGGAAACGTGAAGAAGGTGAAGATGGCGGTGGCCAGG1660.10323318884832805No Hit
CACAAAGGGGTTGCGTTTTTCCTTGTAGCATTTGGAAATGATTTACTGGAAT1660.10323318884832805No Hit
TAGATAGGGGCGAGAGATGTGCAAGCAGGGATACCGGGATGGCCTGCGCTTT1660.10323318884832805No Hit
CCTAATGGGCGATCTATAGGCGGGTACTAACTACCTGACTCCTACCCCTCAC1650.10261130216851885No Hit
TAATCAGGGTACCAAGAGTTTGGCCAGTGTGTGGGAGACTTGAACACCCCCC1650.10261130216851885No Hit
TTGAGGGGATAAGGGATACTCAACTGGTAGCTATGATTATAGTTACAGCTAT1650.10261130216851885No Hit
AATGACGGGTTCTTCACCATTGTATACCTGACACTTAATATGGAGACTAATG1650.10261130216851885No Hit
CAAAAAGGGGTATTATGCATTGGAAAGGTATTTTTTTTAAGTTCTGTTGGCT1640.10198941548870966No Hit
CGCAAGGGGGGTCTTGGAGGAAGGTCAATAAGCTGATAGAAAACCCTAAGAT1640.10198941548870966No Hit
AATTGCGGGCATACAGGAGAGAAGCCTTATCGATGCATTGAATGTGGGAAAG1640.10198941548870966No Hit
CTAGTAGGGCAGATCCTCCAGGACAGAAAGTTGTTATGAGAAATGTGGCCGA1630.10136752880890043No Hit
AGAAGAGGGGAAGGAAATAAAATATCCTGAGGTTTTAAGTTTAACAACTAGG1630.10136752880890043No Hit
AGTCACGGGCACAGTGGGATGGCCAATAAGGTGAGGAGCTAGAATTATAAAT1630.10136752880890043No Hit
GTTTGCGGGGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCGCTCAGAAA1630.10136752880890043No Hit
GCATTGGGGCTTTCGGTCCAGGCGGCGGCAGGGCTGAGCCAGCGACGCCCTC1630.10136752880890043No Hit
TACATGGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGG1620.10074564212909125No Hit
ATCCAGGGGCAAGCTTATATGATTCTTGAGGTAACTCTACCAGATACTTCCA1620.10074564212909125No Hit
GCACTGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1620.10074564212909125No Hit
CAGCTTGGGCACATAAAGGCTCATAGCTAAAAAGTGGCAGAGCCAGATTTTC1620.10074564212909125No Hit
GAAAGCGGGGGGGTACTTAAGGCGCGGCCACCGCGGCTGCGGCAGTGCGCCC1620.10074564212909125No Hit
CAGTACGGGACCCTACTGTGTCCTACTTAAGTGGATGCCATTTTTAGTCTCT1610.10012375544928202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)