FastQCFastQC Report
Sat 31 Dec 2022
SRR5848090.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848090.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88181
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT5860.6645422483301392No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC5610.6361914698177612No Hit
AGCACTGGGTTCACCTATCCCCACGTTCACCCAAGCCAAAAAGAAGAATTGT1620.1837130447602091No Hit
TAGTTGGGGTCCTGATTTAATTTTGGTAAGTTGTATGTTTATAGGAATTTAT1530.17350676449575306No Hit
TCGCTAGGGAGACCTCTTGGCTGTTAACTGAAACTGAACTTGCTCACATCAT1450.16443451537179213No Hit
GCTCTCGGGAGAAAAAGAAGGAGGAGGAGGAGAAAAAGGAAGAAGAAGAGGA1380.1564962973883263No Hit
CCAGTAGGGATAACAGTTATCTTGTTTCACAATTTTATTACTATCTCACTCT1380.1564962973883263No Hit
ATCAGGGGCAGAAATATTTATATGTTGCTTATGTATGCATACAACATTTGTG1370.15536226624783117No Hit
GTCAAAGGGCAAGGTTAAAAAGATAAGATTTGTAGCATTTGCTGATATCTGT1350.15309420396684092No Hit
GCACTAGGGCAGGACACATTTTACATTCAAATATACAAGTAGGTTGAAAGTA1330.1508261416858507No Hit
TACCTAGGGATAGTAACCTACATTTAAAAAATTTCTTCACAGTGAGCTATGT1330.1508261416858507No Hit
CTCAAGGGGAAGACTCCATCTAAAAACAAACAAACAAACAAACAAAAATTAA1310.14855807940486046No Hit
GCTATGGGGGCGCGCAGACCTAGCGCGTCCAGGTGGGAGGTTAGTGTGGCCC1280.14515598598337512No Hit
TAAAATGGGTGTGGGTTATGTGTTTGCAGTAATACATTTAAGAACAAAGTAG1280.14515598598337512No Hit
GTGCGTGGGAAGGCTGGCTACACGGAAAAGATCGTTATTGGCATGGATGTTG1280.14515598598337512No Hit
CTAGCAGGGGTCTGATTTTGGAATTCTATGAGTCAATCTTTTTGGCAGAATT1260.14288792370238487No Hit
AAGCGAGGGAGCTCACTGAAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCT1260.14288792370238487No Hit
CTCTCGGGGGATATTTCAGTCACTGGTAACAATGTCAGGGTTAACACCCAAT1250.14175389256188975No Hit
GCAATAGGGTCTACTTCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAA1250.14175389256188975No Hit
TGACACGGGGGACCATAACAGGTTGCTATGGAAAAAATGAAATAAGAAATTA1250.14175389256188975No Hit
ACTGGCGGGGGGGTGGGATCTGAACATGGCGGCGGTGGTAGCTGCTACGGCG1240.14061986142139465No Hit
ACTGCTGGGGTACTTACATCAGACAAAATAGAGTTTAAGTCAAAAAAATGTT1240.14061986142139465No Hit
TAAGCTGGGCCCTCTTTTAAACAAATCATGCAAACGATAATCTAGATATATT1230.13948583028089953No Hit
CATGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1210.13721776799990928No Hit
GCGACAGGGAGCCCATTTACATTTAAGATGAATATTGTTATGTGTGAAAATC1210.13721776799990928No Hit
ATCAGCGGGCACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAACA1200.13608373685941416No Hit
AGAACCAGGAAAGATGGGAGAAGACGATAATCATGGAGATATAAGGACCACT1200.13608373685941416No Hit
TGAACTGGGATAATATGCTTAGTAATAAAATGTTTTCTTACCAAAGGAAGCT1170.13268164343792882No Hit
ACTCATGGGAGGGAGGTGGGAGGGGGATGTTGGGAGGCATGGGGGGTGATTA1170.13268164343792882No Hit
GTGGAACGGGAATCTTTTTGCTGCTGTGTTTTGGTGTTTTCATGTTTACTTG1170.13268164343792882No Hit
CGTGGCGGTGGTAAAAATGTGAGCTAGCACTTCTGCGTTCCTTTTGATTTTT1170.13268164343792882No Hit
GTCAGAGGGTGCCGCCGGTCGGCGATGTCCGGCTGGAGCTGTCGCCTCCGCC1160.1315476122974337No Hit
GTCACAGGGACATTTTCTGAATGCCTACTAATGCCAGACACTATTCTAGGCA1160.1315476122974337No Hit
GCGATGGGGACATGCTTTTTACATACCAATATTTCAACATTTTAATCAATGG1160.1315476122974337No Hit
GTCAAGGGGGGTCGCCGCCGGCAGCAGCCTCCCGGCGCGATGAAGACACTGA1150.13041358115693857No Hit
TGTAGCGGGCACTGATTATAGCTGAAGAAATATGGAAACTAAACTACTGCCC1150.13041358115693857No Hit
AGTTGGGGGGCGCGGGGAGCGTGTGGGCCGGGCGGGCGCGGCGGGGAAAGCT1150.13041358115693857No Hit
GCTTGAGGGAATTGGATTTTCCCAGAAGGAAATCTTACTGATCGTAAAGAAA1150.13041358115693857No Hit
GTTAGGGGGATGGAAGGAAATAGTTTTATGCAAATCATATGCATAAGTAAAC1130.12814551887594836No Hit
GAGTCAGGGCAGTCTAATGGTGCTGTTGGAGTCTGGGGAGAATGTCATGCTA1130.12814551887594836No Hit
TAACTTGGGCTTGTAGCAGCCCCTGCAACACCCCAATATTAGGAGTGCAAAA1130.12814551887594836No Hit
CTTGAGGGGCGATCTAAGTCCGGGATTTCACGAAGTTTGATGTCTTGTTCTT1130.12814551887594836No Hit
ATTGCCGGGGTTCTAAAATATTTTATTGGTTTTCCTTTATATCTCAACTTTT1120.12701148773545323No Hit
TTTAAGGGGATTTCAGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1100.12474342545446297No Hit
TCAAGGGGAAGTTGGGAAATTCAACCCCAGAAATTGACAGATGAAAGGAGAC1100.12474342545446297No Hit
GCAAGCGGGTGGTCAAATATTTTGTGATAAATTTTAAAACAAATGAGTAAAA1100.12474342545446297No Hit
TGCACTGGGGACCCTCCGTACACATGAGTTTCACATCCCATGCACAAATGCT1100.12474342545446297No Hit
GTCAGAGGGATGTTTTATTAACTGTCTTTTCTCAGTTTCCATTTCATTTTTT1100.12474342545446297No Hit
CACGCTGGGTACGCGAAGAAGGACCTGATGGGCTCATATGCACCACTGCCAT1100.12474342545446297No Hit
CTGTATGGGATGATTAACTTAACTCTGCATACTTGAGTTTGTTTATTTTTCT1090.12360939431396785No Hit
GGTGCCGGGATTTGAAAATATATAGAGGAGAAAAAAGAAAAAGGAAAGTTTA1090.12360939431396785No Hit
GTCTCGGGAGCAGAGAGAAGACAAATGAACATGAAATATCAGTAACACATAG1080.12247536317347274No Hit
TAAATAGGGAATAGAAAAATTGTAATAGTTTTAATCAAGATGTTCAGGGGTA1080.12247536317347274No Hit
CATGCTGGGATGCTTGAATTCCCTTCACATCGAATCCATTAGCAAATCCTGC1080.12247536317347274No Hit
TTACGGAGGGGTGAGCATCTTCTGCCTGCCAGGCTCTATGTTGGATGCTGGG1070.12134133203297762No Hit
AAGTCCGGGGAGTCTTAGGATCTTTATCAATTTTGTCAGTCTTTCCAAAGAA1070.12134133203297762No Hit
GTAAGTGGGAGAACCTGGTGATTGGGCTCGGGCTCCTCGCCGGCTCCCTGCT1070.12134133203297762No Hit
TACCAAGGGTGCAAGCTCTATGACGTTATGCACAGCGTTTACTCTTGCGTAT1070.12134133203297762No Hit
CTAGTTGGGATGACTTCCTGCAATGTGTAATTTCAAGGCCTTGGCAACCACC1070.12134133203297762No Hit
AAGACAGGGAGGTGGAACCTGCAGAACCAGAGCCAGTCATTTCAGGAGCCGA1070.12134133203297762No Hit
TGGGCAGGGATGTGCAGAAGGGAAACGTGAAGAAGGTGAAGATGGCGGTGGC1060.1202073008924825No Hit
AACGCTGGGAACATCATGAACCCTGTCACCTCGATTCATAGAATAGCTATTT1060.1202073008924825No Hit
TTGCACGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1060.1202073008924825No Hit
GCTACTGGGAATTCAAAATAGTAGCACCGTTTTGGAAAACGGTTTGTTAGTT1060.1202073008924825No Hit
GACAGGGTGTTCATGAGAAAAAGCAGGGTAAAAAGATTTTATTTAATTAATT1050.11907326975198738No Hit
TCCACTGGGATCTCATTTCCCAAATGCAGGTCACAGGGGATTTGCATCTAGT1050.11907326975198738No Hit
TTATTAGGGGGGGAACAGTATAATGTCTCAGAAGTTCTTCTCTCTTATCCTG1050.11907326975198738No Hit
TTTGGTGGGGAAGAAAGAATGAAAAGGAATGAAAAAAGCCTCTAAGAAATAT1040.11793923861149226No Hit
ATTTCGGGGGGTAGCTGCGCTTCCGCAAAGATGGCGGCGGCTGCGGGTAGCT1040.11793923861149226No Hit
GAACCCTGAACCACAAATGCATGGGACTTTAGCTATGCATTTAGAATCTTTA1040.11793923861149226No Hit
TTTCATGGGAATATTAATTAGGAGCTTTAGTCTGATATTCAATTAACAGAGC1040.11793923861149226No Hit
GAGATTGGGATCAGTAAAGCAGGTATTTTCACATGGTGATAAGTAATATAAA1040.11793923861149226No Hit
GCTCGGGGGAGGTTTTGGAGTTAACAGTTAAGTCAACTGCTGGAGAATACAT1040.11793923861149226No Hit
TAATCAGGGATCCCTCTACTATTTTTTAACCAAATCAACAACAACCTATTTA1040.11793923861149226No Hit
AACTTTGGGGTATGATATATTTGAAAAGGCTTCCATTAATATAATAGCTTTG1030.11680520747099714No Hit
GAGGCGGGGCGATGTTACATCCGCAAAGGATGGTGATTACTGGAGATTGCTT1030.11680520747099714No Hit
AGCCAGGGGCTCGGAGCCTGGTTTCCCTCTCTGTAACGCAGCAATAGTAATT1030.11680520747099714No Hit
GTTTAAGGGGAAAATTCAAACAAGACTCTTTCCAATTTAAAGGGCCAAACCC1020.11567117633050203No Hit
ATTCACGGGTATATGTATAAATTAAAGTATGCCTGTAAAGATTTTGCTTCTC1020.11567117633050203No Hit
GTCACCGGGGAGGACCCGCAGGCTGCAAGGAGCAACAGCGATGGCAGTGAGA1020.11567117633050203No Hit
GCCATGGGGAGACTTCGGTTGAGGAAACGGGTATTTCATGTCTCAGGGAGTA1020.11567117633050203No Hit
GTAACAGGGCCGATCTTAGGAGGGGAGAAGTTTATGCAACTGAAAATGTTTA1020.11567117633050203No Hit
GGCTGGGGGTGGTAACACCGCGATGACTAGTTAAGTACTCAGGTACTTATCC1020.11567117633050203No Hit
GGGCACGGGCAGCCATGCCTGGGGCTCAGTCACTTCTATTCCACCCTCTGAG1020.11567117633050203No Hit
GTTCTGGGGATGGCAGTGGAGTTTAGGGATTTGTATGTACTTAAACTGAATA1010.1145371451900069No Hit
GGACAAGGGACTCCTTGACGCTCCCCAGGCTTTCTGTGCCCAGGCCTCTGTC1010.1145371451900069No Hit
GAATACGGGGGCCGGAAGTGATCCCCTGCGTGGCTGGGCTGCTCGGGTTAGA1010.1145371451900069No Hit
TTGTTAGGGGAACACTAACCTTGAATGGGGAAAGCGGCTGAATGATGTTAAC1000.11340311404951178No Hit
TTCTTAGGGGAGCTGCTGGGAGGATGACCATGGCTGGGGGCAGGAGGGGACT1000.11340311404951178No Hit
GACGTTGGGCACGAAGGGCAGCAAAAAACAAATCAGTGATGTTCTGGGGAGA1000.11340311404951178No Hit
ACAAATGGGAGGAAGAAGACCGTTTCTGCTTCAGAATCTGAAGACCGGCTAG1000.11340311404951178No Hit
AGGCGCTTCGGGAGCCGCGGCTTATGGTGCAGACATGGCCAAGTCCAAGAAC1000.11340311404951178No Hit
ACCTGGGGGGTGGAGAGAGGTTGGAGAAGTGCCCTCCACTGTTTTAATGATG1000.11340311404951178No Hit
TTGTGCGGGGTGGCAATCACCAAAACAATTACCAGCCATACTAAAGGAGAAC990.11226908290901667No Hit
CGTCGCGGGATGTACTGACATCCAGGGTAAAGTAAAAGACTTTTAAATATTG990.11226908290901667No Hit
TAAGTGTGGGGATTTTATATGAATTCTAATTCTTTTTCACTACATATGTTTT990.11226908290901667No Hit
TTATATGGGACTGGGAGTCATGAATGTCTTTCCAATAATTCAGGGAATTCTA990.11226908290901667No Hit
CTCTCGTGGGGAGGCAGAGAAGAGGCGATGGCGGCGATGGCATCTCTCGGCG990.11226908290901667No Hit
CGGCTTGGGCCTTCAACTTTTTCCTCTTTAAGTAAATTAGGAAACAGTAACC990.11226908290901667No Hit
CACGTTGGGCAATGATGCCACAAGCTCCATACCCAAACATCAGTGATGAAAG980.11113505176852155No Hit
GATTTTGGGCAGGTAGAGATAATACTTTTTATTCTTTATTAGCAGAGAGTAC980.11113505176852155No Hit
TGCGCTGGGTCTAGCACGGGGCTGATCTCTAATTGGTCATCATCCTCTCTGC980.11113505176852155No Hit
TTTTAGGGAGAAAGAGAAGGGGAAGAAAATGAAGCCTTACATAAGATGATTG980.11113505176852155No Hit
GAGTTTGGGTTCCTTAAAATCTATTTTATCTCTATTTAATAGAACTACAGTA980.11113505176852155No Hit
GACCAAGGTGCAAGTGTTTATTTTTCAAATCTATAAGTACATAGTTCCACCA980.11113505176852155No Hit
ATTGGTGGGGTAGTCCAAGGCACAAAAAAGCCCTAAGCCAAAATGAAGAACA970.11000102062802644No Hit
TTCACGGGGGTAACTTCAAAGTGCAACCTGTGAATCTTTCTTCTTCTATTAG970.11000102062802644No Hit
GCTACTGGGTAGCCGGGGACATATATTTATATATAAAGTGATTAGTTGAACT970.11000102062802644No Hit
ATAGCAGGGAGTGTCATTTAGAGTTTTATAGAAAGCTTCAACCTGAGTTCTG950.1077329583470362No Hit
GGGCAAGGGGAGGGCTCTGGTGGCGGCGGTGGCGGACGCTTGGGGTCTGGAC950.1077329583470362No Hit
GATCTAGGGGATCTCTCTACGGGATTGAAATGGTTTTAATGTTCTTTTGACT950.1077329583470362No Hit
CATTATGGGTGCCACCAGTAATTTTATAAGAAATCTGAATAGTTCTCCCCTT950.1077329583470362No Hit
ACTAGAGGCCTGCACCGTCTCACTGTGTGTCTCGTGTCAGTAATTTATATGG950.1077329583470362No Hit
ACAGCAGGGCACTCCGGGACGTTGCCCAAAGGTAGGAAGAAAGCAGAGGGAA950.1077329583470362No Hit
GTGCCGAGGGGCTGTGACGGAGCTGAAGGACTCTTGCCGTAGATTAAGCCAG950.1077329583470362No Hit
ACGCAAGGGATCACAAAAAAGGTTAATTTTATTTTCTATGGAAAGCTAGAAT940.10659892720654109No Hit
GTGTTAGGGGAGAGTGACTGAGTCACTGAGCGTGGCACATGAACAAACGTCA940.10659892720654109No Hit
TATGTAGGGTGTGCGCTACTGGTGTTATGGAAAATCCTTATGAAAAGCTAGA940.10659892720654109No Hit
TGTTAAGGGATGTCAACAAACAGAAAAGCGGGCTGAGAAAGTGCATATCGTT940.10659892720654109No Hit
ATTATAGGGTGGATGAAAAGTACACAGGTTTAAAAAAACAGCTGAGTGATCT940.10659892720654109No Hit
GCCCAGGGCACATTAAAAAGCAGCTTAGTAACTGTGACTGATTGGAGCGACA940.10659892720654109No Hit
GCCAACGGGAGCTGTAAATAACAGGATACAGAATTAACAAGAGAAAATGTCT930.10546489606604596No Hit
AGCACCGGGGACACAACTGGTTTATCATCTCCATGCAGTGGTGGCAACAGTG930.10546489606604596No Hit
GAAAGTGGGACAACCTAACATCACCATGATGAACTAGAAAAACAAGACCAAC930.10546489606604596No Hit
GATACTGGGATGTACACACTTTTATTGTTCTTTATTTTAGTAAGGAAAAGAA930.10546489606604596No Hit
GTAAAAGGGATTTCCCATCATGAAATTATATGTAAATATTCACCTGTTTTAT930.10546489606604596No Hit
TAGTCTGGGAGGGACATGAATGGAGCTGGAGGTCATTATCCTTAGCAAACTG930.10546489606604596No Hit
TAACTCGGGCTTCAAGGGTTTCATTTCTACACAAATTCTTTACGCACTTCTG930.10546489606604596No Hit
CACATTGGGGAAACCCTCCGGTACCTCATGGCACATCTAAAGAGAGTGACCC930.10546489606604596No Hit
GCTCGCGGGATATCTAATAAGGAATTGATATCCAGTGTACATGTAGAACTCC930.10546489606604596No Hit
TCTGTAGGGGGTAGTGAGAGGGTGAAAAATTGGTAGGATCAATGGATTGTAG920.10433086492555085No Hit
CTTAAGGGGAGCCTTGATTTCAGTAGATGTAATGGAAGCCAAATTAAATTGA920.10433086492555085No Hit
GAATCCGGGCTCCCTGGCTGCCAAGGTGATATCTCTACAAAATGTATCATAG920.10433086492555085No Hit
GTTGCAGGGGGTGCTCAGCAAATGCTCCCATCCATCTGGGAGTATAGACTTA920.10433086492555085No Hit
TAGATTGGGGTCTTAAACCAAAAATAAAAAACAATGCTTCTAAGAACTGTCC920.10433086492555085No Hit
TTCACTGGGCCATATAACTGTTGGGTGCATCAGTGCTTTTCAAAGGGGCTGC910.10319683378505573No Hit
GTGTTCGGGTTCTGCGGGAAATGAAATTGTGTGTGTTTTATCTTCAGAGCTG910.10319683378505573No Hit
GTTCTGGGGCAGTAAATATTTACGGAGTTTTCAAATTGCAGCAAATATACTG910.10319683378505573No Hit
TATTACGGGCCGATCTATAAGGGGGAACTAGTGAGATGAAAAATCACCTTTA910.10319683378505573No Hit
TGGCTTTCTCCTTATCACCATTTGCTGTTATCACGGCACACAGCAGGGAATC910.10319683378505573No Hit
TTAGTAGGGGGCTAGGAAGAAAACCATATTGTATATATTGAATTAAAGTTTG910.10319683378505573No Hit
ACTGCAGGGGACTTTGTCTGATTTTAAAAATCCAAGAGTTTTATGACCGAGA910.10319683378505573No Hit
GCCTGTGGGAATGCTAAGTGAATATGTAAGGCAGCTGTTATTATTAACTATG910.10319683378505573No Hit
AGTGATGGGCTGGAAACTATAAACTTACAGCCTCAGCTCCAGGCTATCTGGC900.10206280264456061No Hit
GATTTAGGGGAGCGCAAAGACAAACGCCGGTGGCCGCGGACGCGCCGGCGGC900.10206280264456061No Hit
GTATTAGGGGTAAAATGTTAATTTAGAAGCATTCCACTTCTCATCTATTTAG900.10206280264456061No Hit
TTCATGGGGACTTCATAGATATCTTCATTAAGATTTTGAAATTGATTCTATC900.10206280264456061No Hit
CAGCTAGGGTCACAGCCTTGAAGCAGCTATTTCTTTCCGAATAAAAAGTTTA900.10206280264456061No Hit
GAGCTGGGAAGACTTTGCCTAAGGAAACAATGACTGAGTGCTGCTATGGTTT900.10206280264456061No Hit
ACTACCGGGTGAAGGATGGTTTGGGAATCTGTGCTTCTAATAGGTTCGCTAG900.10206280264456061No Hit
CTTTGTGGGGAGTATGGTAGATAGGGTCATTTTCATCTATTAAAACCATTTA900.10206280264456061No Hit
ACAACGGGGGTGGTTATGTGCCCTGAAAACTCCAGCCTCCGTGTCTTCAATT900.10206280264456061No Hit
GGTAGAGGGATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGA900.10206280264456061No Hit
CAGTATGGGCAGTTTTCTATGGATATAGTTCCCAGATTGAACTCCTTAATAT890.1009287715040655No Hit
AAACATGGGGTATACACAAATGTTCATATCAACATTATTCCTAATAGGCAAA890.1009287715040655No Hit
CGCATAGGGGGAGGGGTGGATGCTGCATTTCATTGGAAATGTCATTTTTCCA890.1009287715040655No Hit
TTGGTGGGGGTCTTAGCTCCAGGTGCGTACGGCATCTGACTTGACGTGGCCC890.1009287715040655No Hit
GATGCTGGGGAGTAGGAAAAGGCAAGCCTGACAGAACATGTATTTTTAAGCA890.1009287715040655No Hit
GAGTTAGGGGGATCAAAGATCATTTTGAGAATTGGATAAAATGTGTTTGCTA890.1009287715040655No Hit
CGTAGTGGGGGCCTCTACCTCCTGGAGTTATACAACTTGGCTTGTTTACCTC890.1009287715040655No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)