FastQCFastQC Report
Sat 31 Dec 2022
SRR5848087.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848087.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139416
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC4060.2912147816606415No Hit
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT3730.26754461467837265No Hit
TAAGTGCGGGACATGGAACGCTTTCATAAACTTCAGGGATCCCGTGTTGCCA1810.12982727950880818No Hit
GTGACGGGGAGGCAGCCATGGTGCGGTTCAAGCACAGGTACCTGCTCTGCGA1790.1283927239341252No Hit
CGTCATGGGCAAATGACTTGGACTGGGCTATAGATACCACAGAATTGTTTAA1660.11906811269868595No Hit
GCTACAGGGCTCCTTATGAACGATTTGGCATTTCTCTCACCTGGATAATTTT1640.11763355712400297No Hit
TATTATGGGGAGGGAAGGGAAGGGGTCAAGGGCAAATTGAGCTTCCACTTGC1640.11763355712400297No Hit
TCGCTTGGGAATGAATATTGATGCGAAAATCCTCAGCAAACTACTAGCAAAG1630.11691627933666152No Hit
GCATTTGGGGCGAAGATGGCGGCGCTGGGGGTGCTGGAGTCCGACCTGCCAA1570.11261261261261261No Hit
TCTTACGGGGTAGACCTATGTTTTTATTTCTCTTGAGTAAATACCTAGAGGT1550.11117805703792964No Hit
TTCTACGGGCTCTGATAAAGATGGACATTCACAAAAAAGTAACTGACCCAAG1550.11117805703792964No Hit
TAGGTTGGGGGCAGAGGAAGATGGCGCCGCGGAGGGTCAGGTCGTTTCTGCG1530.10974350146324668No Hit
GTTTTTGGGCACCTATCATAATGGTCTTAGTCATTTCACACAAATCAGAACT1530.10974350146324668No Hit
GCAATGGGGGGCAGCCTTCGGTGCAGTCGTCACTCGTGTCTCGCTACCAGCT1520.10902622367590521No Hit
TTTCCTGGGGATTCCAAAGAACATTCTAGGTTTTTTGTTTGTTTTTTTGTTT1510.10830894588856371No Hit
TAGTGAGGGAGACAATGTGGAATTACATAACAGGCATTGCACTAAAAGTGAT1510.10830894588856371No Hit
CACGAGGGGGTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACA1500.10759166810122224No Hit
GGATTGGGGGCTCCTCTCCCAGTCGGCACCACAGCGGTGGCTGCCGGGCGTG1490.10687439031388077No Hit
TCTAGCGGGCTCACCTGTTGTAGCAAATATGGATAAATTGTCTGCTTTTGTT1490.10687439031388077No Hit
GACTAGGGGCAAGTTTCATAAATCTTTCTTCCTTTTAGTATTATAAGCCCAT1490.10687439031388077No Hit
AAATGTGGGAAGGCAGAGAGGATGTGTGTTTGGAAAGCTTTCAACATCAGAT1460.10472255695185631No Hit
CTCTGTGGGGGCCTCTGTTTGGCGCTTTTGTGCGCGCCCGGGTCTGTTGGTG1460.10472255695185631No Hit
AAAAAAGGGCATCCATGCCAACTACCTAACTCGTTATCAGAGCTGATAGAGC1450.10400527916451484No Hit
GACTAGGGGGTGGGGACGTAGAGCCAAACCATGTCAATATTCATTTGAAAAT1440.10328800137717334No Hit
ACAACGGGGCAGTCAACCACACTATCTTGGCATTGGCCCGACAAGGAGCCAA1430.10257072358983187No Hit
GAAAGGGGTCCCTGGCTGGACCAAGCCCATCACCATTGGCAGGCACGCCCAT1420.10185344580249038No Hit
CACAGTGGGCTACAGCAGAAAGCTTTCAGTCTAGTGAGTAAAGAGGCAGTTT1420.10185344580249038No Hit
TGCCGGGATATTAAGCATTCTAACAATGCAAATGTTCCTGCTAATATAGCCA1420.10185344580249038No Hit
GCAGCAGGGAGAGTGTGCCTTACAAGGAAACAAGGCAAATACAGGAGGAAAA1400.10041889022780744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)