FastQCFastQC Report
Sat 31 Dec 2022
SRR5848085.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848085.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137483
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC3870.2814893477739066No Hit
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT3430.2494853909210593No Hit
TCGCTTGGGAATGAATATTGATGCGAAAATCCTCAGCAAACTACTAGCAAAG1780.1294705527228821No Hit
CACGAGGGGGTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACA1720.12510637678840295No Hit
GCAGCAGGGAGAGTGTGCCTTACAAGGAAACAAGGCAAATACAGGAGGAAAA1640.11928747554243072No Hit
TTCTACGGGCTCTGATAAAGATGGACATTCACAAAAAAGTAACTGACCCAAG1590.11565066226369806No Hit
TAAGTGCGGGACATGGAACGCTTTCATAAACTTCAGGGATCCCGTGTTGCCA1550.11274121164071194No Hit
TTCGCCGGGGGAATGCTTACTAAATAAGACAATGGGAGCTTTGCTAAAGCAA1540.11201384898496543No Hit
GTGACGGGGAGGCAGCCATGGTGCGGTTCAAGCACAGGTACCTGCTCTGCGA1490.10837703570623278No Hit
ACAGGTAGGGTGAAGTGGCATGTTGGCCTTTTCTTTCTTCCTGCTCCCTGCA1490.10837703570623278No Hit
GACTAGGGGGTGGGGACGTAGAGCCAAACCATGTCAATATTCATTTGAAAAT1480.10764967305048624No Hit
GCTACAGGGCTCCTTATGAACGATTTGGCATTTCTCTCACCTGGATAATTTT1460.10619494773899318No Hit
CGTCCAGGGACCACTGCTGGTGGTTCACACATCATCCCATCCTTAATATGCC1450.10546758508324665No Hit
TCTAGCGGGCTCACCTGTTGTAGCAAATATGGATAAATTGTCTGCTTTTGTT1440.10474022242750014No Hit
TTTCCTGGGGATTCCAAAGAACATTCTAGGTTTTTTGTTTGTTTTTTTGTTT1430.1040128597717536No Hit
TAGTGAGGGATGAGATAAATACTCCACTCAAAAATTAAAGATTGTCACTAAA1420.10328549711600707No Hit
TCTTACGGGGTAGACCTATGTTTTTATTTCTCTTGAGTAAATACCTAGAGGT1410.10255813446026053No Hit
ATACAAGGGAGGATAAATCAAGATTCTGTTACTTCATCTTGGCTAGAAGCAG1410.10255813446026053No Hit
CGTTGTGGGAAGATAATTTCCAGTTTCCTCTGACGTTCCTAAATGCCACCTT1390.10110340914876749No Hit
TCGCGCCGGGAGCACAAAAGAGGGACTAAAACATTTATATAAATTTTCAAAT1390.10110340914876749No Hit
CAACTAGGGAACTCTGCAGCCTTCAAAGCTCGAACCAAAGCTAGAAGCAAAT1390.10110340914876749No Hit
CACAGTGGGCTACAGCAGAAAGCTTTCAGTCTAGTGAGTAAAGAGGCAGTTT1380.10037604649302095No Hit
TCTGCAGGGATCCGTATGTATTTCCTTAAGCCATACTTGATCTCCAAATGAA1380.10037604649302095No Hit
GCATTTGGGGCGAAGATGGCGGCGCTGGGGGTGCTGGAGTCCGACCTGCCAA1380.10037604649302095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)