FastQCFastQC Report
Sat 31 Dec 2022
SRR5848084.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848084.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121595
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT3970.3264936880628315No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC3690.3034664254286772No Hit
TTGGCCGGGAGATTCTTCTTCCAAAAACATAAAATGAAAGCTACAGGTTTTT1660.13651877133105803No Hit
GATGGGGATGATAGAAGCAAGACCAAATGATGCTACCTATTGTGATAAATCT1650.13569636909412394No Hit
TCGTAGGGTATAACCTATTTTCTTGTGGAAGCAATGTGAGAAATAGGACTTG1650.13569636909412394No Hit
TTGCACGGGGCGCCTAAGATTGATGTGATCCTTGACTTTTTAAAGTACCTGG1630.13405156462025578No Hit
ACCTGCGGGAAACCAAAAACCTTTACTGTTTCTAAATTTCCTAGATTGCTAT1630.13405156462025578No Hit
TTAAAAGGGGACACTGATGAACACGCACAAGCATCAAGACCACCAAGGAAAA1620.1332291623833217No Hit
AAAATGGGGTCTTAGCCAGAGCAATTAAGCAAGACAAAGCCATCCAGATTGG1600.1315843579094535No Hit
TCAATCGGGAGTGTCAGAATTTATAGGCCTCTTTAACAGGGAAGAGACAAAT1600.1315843579094535No Hit
ATAACTGGGAGATGCTTGCGGCAAAAGGAAAGCTGTGTTTATATGGAAGAAA1580.12993955343558536No Hit
TCACTCGGGGCATGAGAGAATCCACACTGGTCAAAAGCCTTTTGAGTGCACC1570.12911715119865128No Hit
GGCATGGAGAATCCACCCAAACACCTTTAAAGGATAGGTGTCTGTTCATAGG1570.12911715119865128No Hit
GCTTACGGGATACTATTTAAGTCTTTTATGGTTATTTCAAGTATACAATTTC1560.12829474896171716No Hit
GTCGTAGGGAACACCAAGCTAGTGTATGTGCAAATATTTCTCTAAATCATTA1540.126649944487849No Hit
TCTACAGGGAAGCTTTTGGCATATTAATTTGCATTTTATTGCTACTCTTTCT1540.126649944487849No Hit
TAAGACGGGGTGAGCTTGTAAGTATCTCTCTAAGCCCAGAGTCTGACTATGA1510.12418273777704675No Hit
ACTTTTGGGTGAATTTTACTTTAGAATTGAGCCCCTGTGCAAAATGTAATTC1490.1225379333031786No Hit
AGCGCAGGGAGAGAAGAACAAAATACTAGAAGCACTTGCCAGCTCAGAGGAT1490.1225379333031786No Hit
GTAACTGGGTGGAAGTAGATAGTGGTTATGGTTGCACAATCTTGAAAATATA1480.1217155310662445No Hit
CAACAGGGGTGTCTCACACTGATGATACCTCACATGTTGACCGGCTATGTGA1480.1217155310662445No Hit
CGGCCGGGGATTAAAGTTGGTTTTAGCAAGGATTAGGATTACTACAATTATT1480.1217155310662445No Hit
ATTGATGGGTCTCTTGAGAACTATATTTTGGTTCCTAGTAACAGCCTTTCCA1470.12089312882931041No Hit
CTTGCTGGGATTTGGATGGGAAACATGTGGTGTTTGGCCAAGTAATTAAAGG1470.12089312882931041No Hit
GCATAGGGGGAAAAATTTTTTGTTAATAAAATATCTGAGGGTATTTTGAGTA1460.12007072659237633No Hit
ACTAGTGGGGAAGCAGAGGAAGGAAGTTACTTGAGGATTGTCAGTGGCTGCT1460.12007072659237633No Hit
GTAAAGGAGGAAGCTGTGGCAGAGGTGGTCACCATCACCAAATCGGTAAAGG1460.12007072659237633No Hit
AAAACAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1450.11924832435544225No Hit
CGCTACGGGGTTCTCTAGATTATTTGACTTCAGTTTCTCTGCCTTCAGGTAA1440.11842592211850815No Hit
GAAAGAGGGAATCTCATGAATAAATAAGTTGATCCATTAGTTAGATTTTCAT1440.11842592211850815No Hit
TATACTGGGGCCTCATCTTGCCATCTCCCGGCCAGGCTGGGAACGGGCACCA1440.11842592211850815No Hit
GTATCCGGGAACTAAAGAGCTTCTGCACAGCAAAAGAAACCACCATCAGAGT1430.11760351988157408No Hit
CACATAGGGTGGCAGCAAAAATAAACTGTCAAGTAGTAAGAAGAACTTGGAT1430.11760351988157408No Hit
TCGCTTGGGGTGTTTGCATTGTCTAATGACAGATAAATCCTTAACATTTCTC1430.11760351988157408No Hit
TGACGTGGGAACTACAACAGCCCAATCTGGTCAGGACTACAAATGACCCAGG1430.11760351988157408No Hit
TAACACGGGGGTGACCGGCTTGGCGGTTGGAGCGGCTGTCGCCATGTTGTCG1420.11678111764464No Hit
AAATAAGGGTCCATATGCTTCTATGTTTTTCACACAAATAGTATGCTACTAT1420.11678111764464No Hit
GTTTAAGGGGCCCTGAACTTGGCTCAGCTGCCGGGCTGCTCCGGTTGGAAAC1420.11678111764464No Hit
AGAAGAGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1420.11678111764464No Hit
TGCACTGGGGTGCTGCTGTTCTGCTACTGGAGAGGGTGAAGTCACTTTCAAC1420.11678111764464No Hit
CCTAGTGGGGACCTCTTGCTGTCTCTGCTCGCCCTCCTTTCTGTGCCCTACT1420.11678111764464No Hit
GATTAAGGGGATGATTATAAAATGCTTAGTATGAGTCTTCATGATCTTGGAT1400.11513631317077182No Hit
TATCGCGGGTCAGGGAGGTTTTGCTCCAGATTACTATGATTGGGGACAACAA1400.11513631317077182No Hit
TCTAGTGGGGAACCAGTGAAACTTGAACCAATGACTTGGCTAGTTCAGCACA1390.11431391093383773No Hit
TAATAAGGGTTGGAAGAAAGACTGCTGCCACGCGGTGCAGAAGTTTCTTTCC1390.11431391093383773No Hit
ATGTATGGGGATCTAGTTATGGGAGGAATATTACAGCTGTAAATTATATGAG1390.11431391093383773No Hit
GCCTCGGGAGGAATTCCAACTTCGCTGCTTTCATCGACATCTTCACCTCAAA1380.11349150869690366No Hit
ACACAAGGGAGAGCGACGCAGCCTTCGGTGCAGTCGTCACTCGCGTCTGGCT1380.11349150869690366No Hit
TTATAGGGATCCTAGGGCCTAATAAGAAGGATGGGCATAACCTCTAACCTAC1380.11349150869690366No Hit
ATATACGGGATTGAGCAGGCCATCAAAGAGCATTTGAATCAAGGCAGCTCTC1380.11349150869690366No Hit
CCAAATGGAGGATGTGTTCAGCCAGTTGACTGTGGATGTGAATTCTCTCTTT1380.11349150869690366No Hit
AGGTTCGGGAGAATGGTTTAAACTGATGACTTTTATATGTACACTGACCATG1370.11266910645996958No Hit
TTCATAGGGAGCCACTGGACCCCGTGCTGTGCACCCTGCGGCCCCGCGGCTG1370.11266910645996958No Hit
GCCTCGGGGTGCCGCAGTAGTTCTTACTCCTATGGAACCAATGATAGAAATG1370.11266910645996958No Hit
TAAATCGGGAACTTTCCTTTTTTATAGGAGTTGCCTGCCTTAACTTTTCAGC1370.11266910645996958No Hit
GAAATAGGGATTGGACAAAAGGGGTATAATCTAATGATTAATAATAAACTGG1360.11184670422303548No Hit
GCTAATGGGATGGAGGATGTTGAGTACCTTTGCATGTGCTCATTGGCCTTTT1360.11184670422303548No Hit
CAGGGGTTGTGACAATAAAATGAAATAATGAAGAAGAATCAGAACAATACCT1350.1110243019861014No Hit
TGTCCAGGGACTGTAAGGAAGAGCTTTTCCATCACCCCCACTTTTTGGTCTG1350.1110243019861014No Hit
AAGCCAGGGGAATTTGTTTACTGACTGGTGTTAAAATGAATGTGCTTATTAC1350.1110243019861014No Hit
TTCCCAGGGAATCACAAATTTTTGGCTAATTTTTAACCTGAGGTTTTGTTTT1350.1110243019861014No Hit
TAAACGGGTGTATTATTACCTGCAAGAATACATGATAGACAATGTATAAACA1350.1110243019861014No Hit
GCCATAGGGGATCTTATCGTGGGACTAAAAATCCATCCATTACATTGGCAAA1350.1110243019861014No Hit
CAACAAGGGATCTCTGTTTGCTGATGATTTAAGCATATACTTAGATAAACCT1340.11020189974916732No Hit
ACACCAGGGGTAATATCAAGAATCTGTAGGGAACTTAGACAAATCAGCAAAC1340.11020189974916732No Hit
ATAAGAGGGGCGTCGCTTTCAGCCTCTGGTGAAGGGCGGCGCGCTTAGGCAG1340.11020189974916732No Hit
GTTTCTGGGAGAACACCAAAGACAAAGGGAAGTCCTAAAAGTTGACAGAGGA1330.10937949751223325No Hit
TACATTGGGGCAGAAGAATGAAACTGGATCCCATATACTACAATTAACTGTA1330.10937949751223325No Hit
TCCGGTGGGATATCTTAGATGTGTAATTTATGAACTACTACTGGATTATTTT1330.10937949751223325No Hit
TCAACTGGGATCTTTTTGATATGCTGCTTGATTTGATTTGCCACTGTTTTTG1320.10855709527529914No Hit
ATTAGTGGGATGCAAGAAAAGGAGTGAGGAATGGGAAAATTGGAAGAACGAG1320.10855709527529914No Hit
GGTTATGGGCTCTTGGAGATTGTTGAATGCAGCCAGTGAAGAAGTAGATTCC1320.10855709527529914No Hit
CGAAGTGGGATTGAATGAAGAGGATGTACACATCTCATTGTTACTGCGTATT1320.10855709527529914No Hit
TTTTCTGGGTTCAAGCAATTCTCCTACCTCAGCCTCCCGAGCAGCTGGGATT1320.10855709527529914No Hit
AACACAGGGGCAAACATGGAATGCCTGTAAGAGTTATTGTAAGTTTTCCATT1320.10855709527529914No Hit
GCTTAGGGGGCATACTGTTGAAACCCGCAGTGTTGCATTTAGAAAACAGTTG1320.10855709527529914No Hit
CGCCTAGGGATTGGCGTTTGAGTGAGCCAAGAAAATGCGTATAAATACACAT1320.10855709527529914No Hit
CAGAGGCAGAGGAAAATGGGAAATTGGATATGAAAGAAATACACACCTACAT1310.10773469303836507No Hit
GAAGTGGGGATGTGAAATACAAAACTAGCATCTCCTTTAGTTACAGTATTTT1310.10773469303836507No Hit
ACGTAGGCAAATGGCGGTCTTATAGTTTCAATTCTGAAAATAGCAAACTTAA1310.10773469303836507No Hit
GTACATGGGGATTTAAAAACAAGCAAAGAAACAACACCTCAGCAGCTGCCCG1310.10773469303836507No Hit
TGGTTCGGGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTTAAAGTATACC1310.10773469303836507No Hit
CATCATAGGGGGACCTGAAAAGAAGCTTTGCCTGGAGGAAACCTTACCTGAC1310.10773469303836507No Hit
ACAATAGGGAAGGCTGTTGTGATCTGTGACATATGGGTTATATTATTGTGTC1310.10773469303836507No Hit
CAATCTGGGACCGGAGGGAGGAGGGAGGATGCGCTGTGGGGTTGTTTTTGCC1310.10773469303836507No Hit
CATTAGGGGGGGCAGTGGTGCTGGGAGTGTCGTGGACGCCGTGCCGTTACTC1300.10691229080143098No Hit
TTTTTGGGGATTGTAATTGATTTGTTATGTGTACTGTGGGCTTTGGGTTTCT1300.10691229080143098No Hit
GTTTCAGGGATTGATAGTGGAGATATATTAATTTTTAAAACTGTAAAGTAAA1290.1060898885644969No Hit
TTGGCTGGGATTACAGGCGTGTGCCTCCATGCTCAGCTAATTTTTTTGTATT1290.1060898885644969No Hit
TGTGCAAGGATAGCTCTTTAATTCATCAGTATTAATACAGAACTATCATTTG1290.1060898885644969No Hit
CTGTCAGGGGATGATTTTCTATCCAGCAATTTTACTGAAGTCATTTATCAGT1280.1052674863275628No Hit
ACCCAGTGGGCGAAAGATGAGAGTGTACTTTTACCAAAAGTTATCTAAGCCT1280.1052674863275628No Hit
ACAAGTGGGTGCTCTCGGTGAGTTATCACAGAAATGATGTTGCAGTTATGGT1280.1052674863275628No Hit
ACTCTGGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1280.1052674863275628No Hit
TAATGGGGGCTTCCAGATTTTAAAGGAGAAGAGGATAATTGTAGATTGGGCT1280.1052674863275628No Hit
TATAATGGGCAGCCTCCTTTGGGGCTGGGCGCGGTGGCTCACGCCTGAAATC1270.10444508409062872No Hit
GATCACGGGGAATGCCTGTATTTTCAAGTCATCTTCTTATGAATTACTCTAG1270.10444508409062872No Hit
ACAGAATGGGTATGGTGGGGTGAGGGTGGTTACACCCTGAAATTTAAATGAT1270.10444508409062872No Hit
GGGTTAGGGGGACACGGCGGAGCAGAGAGAGATGCTCGGCCGCTCCTCCTCC1270.10444508409062872No Hit
AGCCTGGGAAACAGAGCGAAACCTTGTCTCAAAAAAAATCAAAAAAACGGGA1270.10444508409062872No Hit
AAGCCTGGGCGAGGAGAGCAAGACTCTGTCTCAAAAATAAATACATAAAATA1260.10362268185369465No Hit
CAAGTCGGGGGGCATTGTTTTCTACAACCAAATTCTGGGTTTTTTTCTTCTT1260.10362268185369465No Hit
GTGCTGGGAAGGCGTCTGTAAAAGAAGATATCTTTATTGGAGCAATGTTCAT1260.10362268185369465No Hit
TTTGAGGGGATGCATGCGCAGTGTGGAGGCGCTGAGGCTGCTGGAGGCGCGG1260.10362268185369465No Hit
ATTTCTGGGGTTCAACAGGAGCTTCAGTCAAAAAGGGCTCGGAGCTCAGGGA1250.10280027961676057No Hit
GATTCAGGGAAGGCTCAGAATTGGAGGACTTGGTTTCAGAAGAAAGTGGAGT1250.10280027961676057No Hit
ACTTAGGGGTAATGTGAAAATAAGATAAAATGTCCTGGAGCTAATTCTAGCT1250.10280027961676057No Hit
ATGATTGGGAGCTTATGCAGTCTAGGAGCTTTCCAATACTCATTTAATTAAG1250.10280027961676057No Hit
CCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGG1250.10280027961676057No Hit
GTTGATGGGAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTG1250.10280027961676057No Hit
TGTAATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1250.10280027961676057No Hit
TCTGCCGGGATGACACTGTATTAAAACTGTTCACATCTAAAATAAGAACTTC1250.10280027961676057No Hit
GATCTCGGGAACGAATCGGGGGATCAACTGAAAAGGCCTTTTGGAGCCTTTC1250.10280027961676057No Hit
GAATGGGAAGATTCCATTCAATGTTACTATTCATTCACTACTTCACCTGACA1250.10280027961676057No Hit
TTCCCGGGGCCCGGACCCACGTGGAAGCGGCACTCAAGATGGTAGGAGAATG1250.10280027961676057No Hit
GAGCAGTTTTAACATTACTAGAATTGTGACATTTACCCCTTTTTATATGATT1250.10280027961676057No Hit
TTTCTTGGGGATTCTAGACTTTTTGTTTCTTGCAACAACAGTGCCCTCTGCT1250.10280027961676057No Hit
ACTTTTGGGCCAGGCCTGTTGACATAGTTGAAAAAGCTTTAAGTTGGCTTAA1240.10197787737982647No Hit
GCCGCAGGGCCCAAAGGGTTTTGGGTATAGCCTGCCCTGGAGGGGAAGGAAG1240.10197787737982647No Hit
TTTCTTGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1240.10197787737982647No Hit
TTCTGTTGGGATAGAGAATGTTGTGTAGTTTGCTGTTTTATTTTTTTAAAGA1240.10197787737982647No Hit
TAGACAGGGGTTCTTTTTCTGTTCTACAAAGTGTGTGTATATGTGACTATTA1240.10197787737982647No Hit
ATAAAAGGGTCAGCTGTCCGGGCTGCTTTCGCCTCCGCCTGTGGATGCTGCG1240.10197787737982647No Hit
ATCGCCGGGACAGCATACCCTACCATGCTCAGCTTGTTCTTTTAATGCTTTT1230.10115547514289239No Hit
GGCCACGGGGAAATTGACTAAATATTGAGAGCAAATGACATAACTTTATTTG1230.10115547514289239No Hit
GTAAGGGGGAACTCAAATCTTTTGTGTAGCTAAGAGAAGAATGTATTTTGCT1230.10115547514289239No Hit
CGCTGGGGGATGGGGAATGAGATTCTTGGAGATCCCACCTGATCTTTACTAA1230.10115547514289239No Hit
GCGCATGGGAAGCTTTTATCTTTTAACCAACTGAACAATACACCAAAAGCAG1230.10115547514289239No Hit
TTTACGGGGGAGAGCCCCAGTTCAAAAACCTATTACATAGACCACATTCAGG1230.10115547514289239No Hit
CACTAGGGGAACACAGAGTCACCTGTGACAGGCTCTAGGTTTGAGCTAGACT1220.1003330729059583No Hit
AACGCTGGGTAGCGAATGTCTTTTAAGAGGACCAGCCAGACTAACATGGTGA1220.1003330729059583No Hit
TGGCCCGGGGATAAACTCAAGAGAATAATTTTTATAAACCCTGTTTTCCAAT1220.1003330729059583No Hit
TGAAATGGGACCTATTGAGCGTCTTCCATCTTCTGAGCACTGAGGCAACTAC1220.1003330729059583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)