FastQCFastQC Report
Sat 31 Dec 2022
SRR5848083.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848083.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121873
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT4320.354467355361729No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC3860.31672314622598935No Hit
GATTAAGGGGATGATTATAAAATGCTTAGTATGAGTCTTCATGATCTTGGAT1860.15261788911407778No Hit
ATAACTGGGAGATGCTTGCGGCAAAAGGAAAGCTGTGTTTATATGGAAGAAA1860.15261788911407778No Hit
GATGGGGATGATAGAAGCAAGACCAAATGATGCTACCTATTGTGATAAATCT1780.1460536788296013No Hit
TTCCCGGGGCCCGGACCCACGTGGAAGCGGCACTCAAGATGGTAGGAGAATG1760.1444126262584822No Hit
TTGGCCGGGAGATTCTTCTTCCAAAAACATAAAATGAAAGCTACAGGTTTTT1750.14359209997292263No Hit
TGCACTGGGGTGCTGCTGTTCTGCTACTGGAGAGGGTGAAGTCACTTTCAAC1740.14277157368736307No Hit
TCTAGTGGGGAACCAGTGAAACTTGAACCAATGACTTGGCTAGTTCAGCACA1680.1378484159740057No Hit
TCTACAGGGAAGCTTTTGGCATATTAATTTGCATTTTATTGCTACTCTTTCT1680.1378484159740057No Hit
TATCGCGGGTCAGGGAGGTTTTGCTCCAGATTACTATGATTGGGGACAACAA1680.1378484159740057No Hit
GTAACTGGGTGGAAGTAGATAGTGGTTATGGTTGCACAATCTTGAAAATATA1650.13538683711732705No Hit
TAATAAGGGTTGGAAGAAAGACTGCTGCCACGCGGTGCAGAAGTTTCTTTCC1630.13374578454620795No Hit
ATTGATGGGTCTCTTGAGAACTATATTTTGGTTCCTAGTAACAGCCTTTCCA1600.13128420568952925No Hit
CTTGCTGGGATTTGGATGGGAAACATGTGGTGTTTGGCCAAGTAATTAAAGG1590.13046367940396972No Hit
AGCGCAGGGAGAGAAGAACAAAATACTAGAAGCACTTGCCAGCTCAGAGGAT1580.12964315311841015No Hit
GTATCCGGGAACTAAAGAGCTTCTGCACAGCAAAAGAAACCACCATCAGAGT1580.12964315311841015No Hit
GGCATGGAGAATCCACCCAAACACCTTTAAAGGATAGGTGTCTGTTCATAGG1570.1288226268328506No Hit
TGACGTGGGAACTACAACAGCCCAATCTGGTCAGGACTACAAATGACCCAGG1570.1288226268328506No Hit
GAAATAGGGATTGGACAAAAGGGGTATAATCTAATGATTAATAATAAACTGG1560.12800210054729105No Hit
TCAATCGGGAGTGTCAGAATTTATAGGCCTCTTTAACAGGGAAGAGACAAAT1550.1271815742617315No Hit
ATTAGTGGGATGCAAGAAAAGGAGTGAGGAATGGGAAAATTGGAAGAACGAG1550.1271815742617315No Hit
ATAGTGGGGGACCCGGTGGTGTTCCCGGGAGGAGAGGGCGGAGGGCGGAGGG1540.12636104797617193No Hit
CGTAGGGGGACCTTAAAACACAAGTGGGACAATAAAGCCTTTTGGATTGTTG1530.12554052169061236No Hit
TAAACGGGTGTATTATTACCTGCAAGAATACATGATAGACAATGTATAAACA1530.12554052169061236No Hit
ACCTGCGGGAAACCAAAAACCTTTACTGTTTCTAAATTTCCTAGATTGCTAT1520.12471999540505281No Hit
ACTCTGGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1520.12471999540505281No Hit
TCGTAGGGTATAACCTATTTTCTTGTGGAAGCAATGTGAGAAATAGGACTTG1520.12471999540505281No Hit
TAAGACGGGGTGAGCTTGTAAGTATCTCTCTAAGCCCAGAGTCTGACTATGA1500.12307894283393368No Hit
AAAACAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1500.12307894283393368No Hit
AAGCATGGGAGGAAATAGCACTTTTGCTATTGCCTGTCTTCAGAGGGCTTTG1500.12307894283393368No Hit
GGTTATGGGCTCTTGGAGATTGTTGAATGCAGCCAGTGAAGAAGTAGATTCC1500.12307894283393368No Hit
GTTTCTGGGAGAACACCAAAGACAAAGGGAAGTCCTAAAAGTTGACAGAGGA1490.12225841654837413No Hit
ACTAGTGGGGAAGCAGAGGAAGGAAGTTACTTGAGGATTGTCAGTGGCTGCT1490.12225841654837413No Hit
TGGTTCGGGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTTAAAGTATACC1490.12225841654837413No Hit
TCGCTTGGGGTGTTTGCATTGTCTAATGACAGATAAATCCTTAACATTTCTC1490.12225841654837413No Hit
TATACTGGGGCCTCATCTTGCCATCTCCCGGCCAGGCTGGGAACGGGCACCA1490.12225841654837413No Hit
ACAAGTGGGTGCTCTCGGTGAGTTATCACAGAAATGATGTTGCAGTTATGGT1480.12143789026281457No Hit
AAGCCAGGGGAATTTGTTTACTGACTGGTGTTAAAATGAATGTGCTTATTAC1470.120617363977255No Hit
ACAATAGGGAAGGCTGTTGTGATCTGTGACATATGGGTTATATTATTGTGTC1470.120617363977255No Hit
CAACAGGGGTGTCTCACACTGATGATACCTCACATGTTGACCGGCTATGTGA1470.120617363977255No Hit
GAAGTGGGGATGTGAAATACAAAACTAGCATCTCCTTTAGTTACAGTATTTT1460.11979683769169544No Hit
CTGTCAGGGGATGATTTTCTATCCAGCAATTTTACTGAAGTCATTTATCAGT1460.11979683769169544No Hit
TTACTAGGGAACATAGGCAACTAAAGCAAAGATAGACAAATGGGATTTTATC1460.11979683769169544No Hit
TTGCCCGGGTGTCCTGCCTGTGCCCCTTACAGTTCTGGGCGATGGCCGGTCA1450.1189763114061359No Hit
GCAATTGGGATCAAGGAGGAGGTTTACATCACCCATTCTGATCTGTTTGCCT1440.11815578512057634No Hit
AAGACAGGGACTGTAGAGTTATAAAAAATGTGGTTACTCTTTTTTTTTTTTT1440.11815578512057634No Hit
TCCGGTGGGATATCTTAGATGTGTAATTTATGAACTACTACTGGATTATTTT1440.11815578512057634No Hit
TTTGAGGGGATGCATGCGCAGTGTGGAGGCGCTGAGGCTGCTGGAGGCGCGG1440.11815578512057634No Hit
TAGACAGGGGTTCTTTTTCTGTTCTACAAAGTGTGTGTATATGTGACTATTA1430.11733525883501678No Hit
CAATCTGGGACCGGAGGGAGGAGGGAGGATGCGCTGTGGGGTTGTTTTTGCC1430.11733525883501678No Hit
GCTTATGGGAACTTTATGAGACTGTTTTACACACTAGTACAATACAATTATT1420.11651473254945724No Hit
GTAAAGGAGGAAGCTGTGGCAGAGGTGGTCACCATCACCAAATCGGTAAAGG1420.11651473254945724No Hit
AAGCCTGGGCGAGGAGAGCAAGACTCTGTCTCAAAAATAAATACATAAAATA1400.11487367997833811No Hit
CATTAGGGGGGGCAGTGGTGCTGGGAGTGTCGTGGACGCCGTGCCGTTACTC1380.113232627407219No Hit
GGCTATGGGACATCTTCCAGGCAAAAGTAGGGTATCTTGAACTCCTTTCTTC1380.113232627407219No Hit
TAAGTAGGGATCATCTACAGATCTTCTGGTCGCTTCCTTTCCTCCACTGATG1380.113232627407219No Hit
ACCCAGTGGGCGAAAGATGAGAGTGTACTTTTACCAAAAGTTATCTAAGCCT1380.113232627407219No Hit
CATCATAGGGGGACCTGAAAAGAAGCTTTGCCTGGAGGAAACCTTACCTGAC1380.113232627407219No Hit
ATAAGAGGGGCGTCGCTTTCAGCCTCTGGTGAAGGGCGGCGCGCTTAGGCAG1380.113232627407219No Hit
CAATCTGGGAGGTTGATTATTGTGGTTGTATTGTTCACTGTGTGTAGAAATA1370.11241210112165943No Hit
ACAGAATGGGTATGGTGGGGTGAGGGTGGTTACACCCTGAAATTTAAATGAT1370.11241210112165943No Hit
CAAGTCGGGGGGCATTGTTTTCTACAACCAAATTCTGGGTTTTTTTCTTCTT1370.11241210112165943No Hit
TGTCCAGGGACTGTAAGGAAGAGCTTTTCCATCACCCCCACTTTTTGGTCTG1360.11159157483609987No Hit
AATCGTGGGAGGAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAG1360.11159157483609987No Hit
GCGCATGGGAAGCTTTTATCTTTTAACCAACTGAACAATACACCAAAAGCAG1360.11159157483609987No Hit
GCCTATTTTCTACTCTCCCTGAGCAGAAATTTAAGTGTCACATTTTGCCAAG1360.11159157483609987No Hit
TATAAGGGGGAACCAGATTGCTGCAGCTTTGTTTACAATTCACAAAGGAAGC1360.11159157483609987No Hit
GCACTCCAGCCTGGACAGAAGTGCATTTCATAATGCATTTTAATTGCATTAG1360.11159157483609987No Hit
CTCAAGGGGAATAAATTGTTCTAGCATTTGTATAAGCCTTTACAAATGTCAA1360.11159157483609987No Hit
TATGCAGGGGAAATCTTCAATTTGATCCTAATATGGATACATGTTAATCTTC1350.11077104855054033No Hit
CGCTACGGGGTTCTCTAGATTATTTGACTTCAGTTTCTCTGCCTTCAGGTAA1350.11077104855054033No Hit
GATATGGGGAGAAATTGCTTATGGAACATTAGACTCTGGCTCCACTAAAGAG1350.11077104855054033No Hit
GTTTCAGGGATTGATAGTGGAGATATATTAATTTTTAAAACTGTAAAGTAAA1350.11077104855054033No Hit
TTCCCAGGGAATCACAAATTTTTGGCTAATTTTTAACCTGAGGTTTTGTTTT1350.11077104855054033No Hit
TCAACTGGGATCTTTTTGATATGCTGCTTGATTTGATTTGCCACTGTTTTTG1340.10995052226498077No Hit
ATGATTGGGAGCTTATGCAGTCTAGGAGCTTTCCAATACTCATTTAATTAAG1340.10995052226498077No Hit
TATATGGGGCAAACATAGAGGCATGACTCTGTGAATGGCTTCTGGCATTAAA1340.10995052226498077No Hit
CCTAGTGGGGACCTCTTGCTGTCTCTGCTCGCCCTCCTTTCTGTGCCCTACT1340.10995052226498077No Hit
CGCCTAGGGATTGGCGTTTGAGTGAGCCAAGAAAATGCGTATAAATACACAT1340.10995052226498077No Hit
AAAATGGGGTCTTAGCCAGAGCAATTAAGCAAGACAAAGCCATCCAGATTGG1330.1091299959794212No Hit
TGTAATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1330.1091299959794212No Hit
AGCCTGGGAAACAGAGCGAAACCTTGTCTCAAAAAAAATCAAAAAAACGGGA1330.1091299959794212No Hit
AGGTTCGGGAGAATGGTTTAAACTGATGACTTTTATATGTACACTGACCATG1320.10830946969386164No Hit
GGCTTTGGGATGTTCACCAATCTTCTTGCTTTATTCTTAAGAGGTGTCAAGT1320.10830946969386164No Hit
CGGCCGGGGATTAAAGTTGGTTTTAGCAAGGATTAGGATTACTACAATTATT1320.10830946969386164No Hit
GATACTGGGGGGGACCAAGGAGGATCTAGGACCATCTGCTGATCCTGTTACC1310.10748894340830209No Hit
CTCTCCGGGACTCTTGAATTTTTCAGATAATTGAGTAACATAATAGAAGAGA1310.10748894340830209No Hit
ATATACGGGATTGAGCAGGCCATCAAAGAGCATTTGAATCAAGGCAGCTCTC1310.10748894340830209No Hit
GCCATAGGGGATCTTATCGTGGGACTAAAAATCCATCCATTACATTGGCAAA1310.10748894340830209No Hit
TTGCTGGGGGGCCTGGAACCCATGTCAGTCTCTCACCACCTCCAGCTTCGAT1300.10666841712274253No Hit
GTGCTCGGGTAACCACTCCGGGGTGCCCAGAGGGAGGGAGAAAGGTTCACTT1300.10666841712274253No Hit
GAAAGAGGGAATCTCATGAATAAATAAGTTGATCCATTAGTTAGATTTTCAT1300.10666841712274253No Hit
ATGTATGGGGATCTAGTTATGGGAGGAATATTACAGCTGTAAATTATATGAG1300.10666841712274253No Hit
CAGAGGCAGAGGAAAATGGGAAATTGGATATGAAAGAAATACACACCTACAT1290.10584789083718296No Hit
ACTTTTGGGCCAGGCCTGTTGACATAGTTGAAAAAGCTTTAAGTTGGCTTAA1290.10584789083718296No Hit
GACTTAGGGCAAACTCCTGACCTAAAGAGATCCACCTGCCTCGGCCTCCCAA1290.10584789083718296No Hit
TTTCTTGGGGATTCTAGACTTTTTGTTTCTTGCAACAACAGTGCCCTCTGCT1290.10584789083718296No Hit
CAGTAGGGAGTTCTGTGACTTCATGTTTTAACTAAGAAGGAAAATTCATAGA1280.10502736455162343No Hit
TAACACGGGGGTGACCGGCTTGGCGGTTGGAGCGGCTGTCGCCATGTTGTCG1280.10502736455162343No Hit
GGTCTGGGGGAAAACTAAAACCTCAAAGACAGATGTTACAGAATCAGCCAGT1280.10502736455162343No Hit
GCTAATGGGATGGAGGATGTTGAGTACCTTTGCATGTGCTCATTGGCCTTTT1280.10502736455162343No Hit
TTGCACGGGGCGCCTAAGATTGATGTGATCCTTGACTTTTTAAAGTACCTGG1270.10420683826606386No Hit
GTTTAAGGGGCCCTGAACTTGGCTCAGCTGCCGGGCTGCTCCGGTTGGAAAC1270.10420683826606386No Hit
TACATTGGGAGGTCTTGATAGGGATTGCATTGAACGTCTAGATGGCTTTGGG1260.1033863119805043No Hit
GCTTACGGGATACTATTTAAGTCTTTTATGGTTATTTCAAGTATACAATTTC1260.1033863119805043No Hit
TTTTTGGGGATTGTAATTGATTTGTTATGTGTACTGTGGGCTTTGGGTTTCT1260.1033863119805043No Hit
CCAAATGGAGGATGTGTTCAGCCAGTTGACTGTGGATGTGAATTCTCTCTTT1260.1033863119805043No Hit
TTTGTGGGGCCACACTAATGGCAGGTTCTCTTAGTCCCTCTAGCTCGTCCTC1260.1033863119805043No Hit
CAAAAGGGGAAGGTCAGAAGTGCCAAGTTGTGCCTCCAAGTGCCATTGGTTT1250.10256578569494473No Hit
TGTGTAGGGCAAGCGGAAGCATGAGACCCGCCCACACTAGCCTCTGTGTTCC1250.10256578569494473No Hit
CGATAGGGGATGATAATTGTTTAATATGTAATAAAAGCAAATACTATTTTTT1250.10256578569494473No Hit
ACGTAGGCAAATGGCGGTCTTATAGTTTCAATTCTGAAAATAGCAAACTTAA1250.10256578569494473No Hit
GTTGATGGGAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTG1250.10256578569494473No Hit
TCAGAGGGGAGCTGGAGCGGGTGCTGCAGGCGCCGCCGCCGGACGTCGGCAA1250.10256578569494473No Hit
CTCCACGGGCAACTCAGCCTCCCATAGTGCTGGGATTGCAGGCATAAGTCAT1250.10256578569494473No Hit
GTACTAGGGAGAGCCGGAGCTGCCGCGCCAGTCGCCTAGCAGGTCCTCTACC1250.10256578569494473No Hit
TTGCACGGGGTCATGTTTTTCGGAAGGCAACTCCATACACTTTTCCTGGTGG1250.10256578569494473No Hit
CGCACTGGGCGTACAACCCACTCTGCCTAGAAGGTGTGGAGGACTCACCACG1250.10256578569494473No Hit
ATTGCCGGGAGATGTTACTAACCAGAAATCTTAGGTATTTAAAGTTATGTTT1250.10256578569494473No Hit
GTGCTGGGAAGGCGTCTGTAAAAGAAGATATCTTTATTGGAGCAATGTTCAT1250.10256578569494473No Hit
CAACAAGGGATCTCTGTTTGCTGATGATTTAAGCATATACTTAGATAAACCT1250.10256578569494473No Hit
GCCACCGGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATC1240.10174525940938518No Hit
TCACGGGAAGCACACTGTATGTTCAGTAGGTTGAACTATGAACACTGTCATC1240.10174525940938518No Hit
TGCATGCGGGTCCGATCTATAGTGGGGATTGTGGACAAAGTTATTATTTTGC1240.10174525940938518No Hit
TCAGCCGGGACAGTTTGATGGTGAACCAGTTGCATGGTACAGACATGATGGT1240.10174525940938518No Hit
ACGGGGGAGTTCTCTGGTGAAAACACATCTGAAAACATGTTAATAGGAATAT1240.10174525940938518No Hit
CAACATGGGGAGTGGTGTCCGAGAAGTCAGGCACGTAGCTCAGCGGCGGCCG1230.10092473312382562No Hit
TTTCGCGGGCATTAGATTTTTTCAGAAAGGTATTTTTTTAATATAAATTTAT1230.10092473312382562No Hit
ACACAAGGGAGAGCGACGCAGCCTTCGGTGCAGTCGTCACTCGCGTCTGGCT1230.10092473312382562No Hit
GACATTGGGGTAGCTAAAACAGATCAATTCAGTCATAATGTTGGGATGGGGC1230.10092473312382562No Hit
GCACAAGGGAAGTATTGACTATTAGAATGTCTTGAACTTTGGTTACTGTGAG1230.10092473312382562No Hit
CTTAAGTGGGGATTCTGCAAATATGTGTGTGTATGTGTTTGTATATGCTTCT1230.10092473312382562No Hit
GTGCCTGGGACATTAAAAATGATAATAAATAACCTTGAAGATTACAGGGTTA1230.10092473312382562No Hit
GCACGCACCACCACGCCCAGCTGCTAATTTTTGCATTTTTAGCAGAGGCGGG1230.10092473312382562No Hit
GTCGTAGGGAACACCAAGCTAGTGTATGTGCAAATATTTCTCTAAATCATTA1220.10010420683826605No Hit
ATAAAAGGGTCAGCTGTCCGGGCTGCTTTCGCCTCCGCCTGTGGATGCTGCG1220.10010420683826605No Hit
ACACCAGGGGTAATATCAAGAATCTGTAGGGAACTTAGACAAATCAGCAAAC1220.10010420683826605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)