FastQCFastQC Report
Sat 31 Dec 2022
SRR5848080.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848080.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124901
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT3190.2554022786046549No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC2980.23858896245826694No Hit
GCGAGCGGGAGCTGTACTGGCGCTACGATGACCACACGAGGCACATGGACCC1610.12890209045564086No Hit
TAACCGGGGTCAAGAAATGTTTGCTTAGTCCACTGTCCAAGAGAGTTTTCCC1530.12249701763796927No Hit
GCTGGGATTACAGGTGTGAGCCACCGCGCCCTGCGTAGTCTTTTGCTTTAAA1530.12249701763796927No Hit
AATCATGGGAGGACATTTTGGCGCAAGTTTTACAGATTTTATTAAAGTCGAA1520.12169638353576032No Hit
TTAATAGGGATATTTTTCCATGGCAAACAATTAGCTATTTCATTTAATAATC1500.12009511533134243No Hit
CGAAAAGGGATATTAGATTGCTCCAGAACAAGGATTTTTATGGGGCCTATTG1480.11849384712692451No Hit
ATCACTGGGGACTTGATTGACAAACCAACATCTAAACAATAATGGCTCCCAG1480.11849384712692451No Hit
ATACAGGGGTCAGGAATTTACATGGAATTCTTTGGAAAGAGACTCGATTTCC1480.11849384712692451No Hit
CTCAGTGGGTGTTAGCAAGGCTATGTATTTGTAAATGTCTCCTACTGCCAGA1480.11849384712692451No Hit
TACGCAGGGATTCTGAAATCCTTTAACAATTCTGATGTGTTTTATTATTTTA1470.11769321302471558No Hit
GACTTAGGGGAATAATAATATTATGATTGTAAAAGATTAAGAAAGCCATTTC1460.11689257892250662No Hit
GTAGTAGGGCAGTTTCAGACTCAGCTTTTCTTGCTTGTGATCAAGTCCTGGT1460.11689257892250662No Hit
GATTTTGGGATAGCAAAGATTTGAATACAGTATTCAGATAACTATTTAGAGA1460.11689257892250662No Hit
GAAACAGGGTGATGATTGACAGAATGAATGAATTGGAGGAAAATGAAATATT1430.11449067661587979No Hit
CTGATCGGGGTCAGAAGTTAATATTATGTAAAAGAGAAAAACAACAGAGAAA1430.11449067661587979No Hit
ACCGCTGGGAATGATCTCGTGTCATGTATTACATAGCAGGTTTTTGGCAGAG1430.11449067661587979No Hit
TCACTGGGATTTCTTTTTTAGTTCAAAGGTGAAATTTTGACCTTTGTATTAA1430.11449067661587979No Hit
CTCGGGGGGCGTGAGCCACCACACTTGGCCAGACTGTAGTTGTTATTGGAGG1430.11449067661587979No Hit
GCAGGCGGGACACAGGAGAGGCACTCAAACTAGGTTGGAAGGTCAGGGAAGG1420.11369004251367083No Hit
TCCAGTGGGAAATCAGGCTTGTTTGTTTTCCTAGAGTATTAGTTTCCTATTT1420.11369004251367083No Hit
CGTACAGGGGTGTTGTAAAAAAGTATTTTAAATCACATTCAAATTTCAGTGG1400.11208877430925292No Hit
TTTTCGGGAGTGCAGAGATTGAGAGCACAGACCACTGGGTTTGAACAAACTC1390.11128814020704397No Hit
GCAGCTGGGTAGCTAATTTCTGGATGAAGATAGGTAAATGCCTAGAATTTAC1390.11128814020704397No Hit
GGTGTAGGGAAAGCAGTAATAGAGAATCGGGTCATGTGGCAACTTCAGCATG1380.11048750610483504No Hit
TTAGCCGGGGGAAGGTATCGCTGGAGAATTGTTGCCAGGCAGGGGTAAAGCC1380.11048750610483504No Hit
GGATCCGGGACTTGCAGATGGTTGAAAGATAGCTTGAATTTAATGAAATAGA1370.10968687200262608No Hit
TCTCCCGGGGACTTGCCTGCTTGCTGTGGGCCCACTGTCAGCTCCTGCCACC1370.10968687200262608No Hit
CAACTTGGGAAGAGAAAATGATGGTCAAAGTCATTTAATGGAATCATGTTGA1370.10968687200262608No Hit
GCACTAGGGATGGGGAACAGAAAGGGAGTATGGAAAGAAAAATTATAAGAGA1370.10968687200262608No Hit
AAGTGGGGGTTTTGAATATGTTTGGGTAAAACTCAAGACAAGACTATTTTTG1350.10808560379820817No Hit
CATGGTGGGGAACTCCTGACCTCAGGTGATCTGCCAGCCTCAGCCTCCCAAC1350.10808560379820817No Hit
AGTTAGGGGATAGTCTCACTTAATTTTCACAAGCATTTTGTGCCCATTTTAC1350.10808560379820817No Hit
GACGCTGGGGGGAGGTGGGGCCTTCAGAAAAGTGATTAGATGGTAGGGGCGG1340.10728496969599924No Hit
GTCTTTGGGAAAGACAAGATTATGTAGCTCTAATTATACGTATATAATTATA1330.10648433559379028No Hit
GCTATTGGGTCCAGCCTGGGTGACAGAGAAGAAAAAACAAAATTTAACTTAT1330.10648433559379028No Hit
TACAGTGGGACGACGCACCATGGCCGACCCTGACTTCTGGACGCACAGTGAT1330.10648433559379028No Hit
GCTCCAGGGCAAAAGATTTAGTTCAAACTGAAACAAATATTCTCCAAATTAA1320.10568370149158134No Hit
AAAAGAGGGCATGGTTCAGAGACTAGAAACAGACTTCAAGATGACTCTTCAG1320.10568370149158134No Hit
ATAGTAGGGACCAATTGGCCTTTACTCTCTGAAAGTGCTTGTGAGCTTTGAA1310.10488306738937238No Hit
GTTACGGGGGCTCTGATGTGCTCCTTCTCAAGTGAGTACAGACTAGAAATAT1310.10488306738937238No Hit
AGCTGGGGGAAGCACGGAATGTGTCTCCTGCTGGGGGCCACGGGCGTCGGGA1310.10488306738937238No Hit
AAAGGGGAACTCCACCAGGTTCCCACAGTAAATATGAGAGAAAAGTTCCTTC1300.10408243328716345No Hit
GCTATGGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAACA1290.10328179918495449No Hit
TCGAGGGGTAAAGGCAACCCTGGCCCACACCCGCATGCGCCCGGTGCAGCCT1290.10328179918495449No Hit
TCAGCTGGGGAACCTTTGACCAATATGGGACCTACTTGATAAATATTTAATA1280.10248116508274553No Hit
GTTTCTGGGGGGAAAGCAACATCTGGAAAGTTTGAACAGTCAACAGAAGAAA1280.10248116508274553No Hit
ATTTCTGGGATTTGACAAAGATGGTGATGGAACTATAACAACAAAGGAATTG1280.10248116508274553No Hit
AACCGCGGGATTGAACACGGCCATATTTTAACTTTTAAGCTTTCGTATTGCG1270.10168053098053657No Hit
ATAGCTGGGAAAATTCCCCATGTTCACATACCAAAGGGTTACTTATGAGCTG1270.10168053098053657No Hit
CAACGCGGGGTGCATTGAGAGGAACTCCTTTTTTTAAAACCATCAGATCTTG1270.10168053098053657No Hit
TGCATGGGAAGCCGTGCAGAGCGAGCACAGCGACGCCAGCCCCATGTCCATC1260.10087989687832764No Hit
AACGAAGGGAGCTGTTGGTGGCTTTAGTCCCAATGTGAATCATGGAGAGCTC1260.10087989687832764No Hit
ATCACAGGGATATGGTGAGCACCAGTTGTCTCTGCCAACATGACGGTAACTC1260.10087989687832764No Hit
GCGTGGGGGCGATCTAGTGCAGGGATGTTAGTATAAGTAACATGAAAACATT1250.10007926277611869No Hit
GGAGCAGGGACAGGTAGGAGCGCCTTTCCGCAGGCACCTGAACACAGCCGGA1250.10007926277611869No Hit
TCTGCTGTCGGGCGCTCATAGAATATGTTATTTTCAAAGAAGTTCAAGAATT1250.10007926277611869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)