FastQCFastQC Report
Sat 31 Dec 2022
SRR5848079.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848079.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124680
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC3330.2670837343599615No Hit
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT2900.232595444337504No Hit
ACCGCTGGGAATGATCTCGTGTCATGTATTACATAGCAGGTTTTTGGCAGAG1530.12271414821944178No Hit
TCCAGTGGGAAATCAGGCTTGTTTGTTTTCCTAGAGTATTAGTTTCCTATTT1500.1203079884504331No Hit
AAAACAGGGCAGAGGATTTCCCTGAAATGCCAAGTTCAGTGAGAACAGCTTC1490.11950593519409689No Hit
GCACTAGGGATGGGGAACAGAAAGGGAGTATGGAAAGAAAAATTATAAGAGA1490.11950593519409689No Hit
CTCAGTGGGTGTTAGCAAGGCTATGTATTTGTAAATGTCTCCTACTGCCAGA1420.11389156239974335No Hit
GACTTAGGGGAATAATAATATTATGATTGTAAAAGATTAAGAAAGCCATTTC1400.11228745588707091No Hit
GGATCCGGGACTTGCAGATGGTTGAAAGATAGCTTGAATTTAATGAAATAGA1390.11148540263073468No Hit
ATCACTGGGGACTTGATTGACAAACCAACATCTAAACAATAATGGCTCCCAG1380.11068334937439847No Hit
ATACAGGGGTCAGGAATTTACATGGAATTCTTTGGAAAGAGACTCGATTTCC1370.10988129611806223No Hit
GTAGTAGGGCAGTTTCAGACTCAGCTTTTCTTGCTTGTGATCAAGTCCTGGT1370.10988129611806223No Hit
GTTCCAGGGATCTCTACCTAAATGAATGAAGAAATGGAAGGATATTTGTAGA1360.10907924286172602No Hit
GGTCCCGGGGAGCTCATTCGCTACGTTACCATCACCAACTGCAGTCCGTTGG1350.10827718960538979No Hit
ATAGCTGGGAAAATTCCCCATGTTCACATACCAAAGGGTTACTTATGAGCTG1340.10747513634905358No Hit
GCAGGCGGGACACAGGAGAGGCACTCAAACTAGGTTGGAAGGTCAGGGAAGG1340.10747513634905358No Hit
TGTCAAGGGAAGCCAGTTAAATGGATAAGGATAATCTTTATATTTCAAGTGA1330.10667308309271735No Hit
TGACGCGGGAATTAAAATAATGGCAGGGGCTGCAATTATTTTGCATCAACCT1330.10667308309271735No Hit
ACAACTGGGAATGGAGGAGACCTAATGTTTCATATGCAGCGACAAAGAAAAC1320.10587102983638114No Hit
AGTTAGGGGATAGTCTCACTTAATTTTCACAAGCATTTTGTGCCCATTTTAC1320.10587102983638114No Hit
GCAGCAGGGTACAGTCGGGAGGCCTTATGAATGCCAAGAGTGTGGACGAAAG1310.10506897658004491No Hit
TCGCAGGGGATCTTCACTGGGGTGCTTTATGCGTGGGTTGTACTTCCCTTGC1310.10506897658004491No Hit
TACGCAGGGATTCTGAAATCCTTTAACAATTCTGATGTGTTTTATTATTTTA1310.10506897658004491No Hit
GGACATGGGTCTTAATTATCCCTATTATAAAGAAAAAAAAGGGTGAGTTTGT1310.10506897658004491No Hit
TACAAGGGGCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATCTGGAACAACA1310.10506897658004491No Hit
TTTTCGGGAGTGCAGAGATTGAGAGCACAGACCACTGGGTTTGAACAAACTC1280.10266281681103626No Hit
TGTTGGAGGGTTAATCAAAAATTGTAGAATATAACAAGTTCGCGTAAATCAG1280.10266281681103626No Hit
TTCGAGGGGTAGCCAGGTGGCATTCATTGGTTCTTGTAAAAACTGGGAATAT1280.10266281681103626No Hit
AGTTGGGGGACTTGGTATGGTTAGTCTTTTAAATTTTTGTGATTCTAATAAG1270.10186076355470004No Hit
GGTGTAGGGAAAGCAGTAATAGAGAATCGGGTCATGTGGCAACTTCAGCATG1270.10186076355470004No Hit
TAAGTGCGGGAAATCAGCTTTGGAAAGTAATTTAAATGTACCTTATTTTTTT1260.10105871029836382No Hit
AAAGGGGAACTCCACCAGGTTCCCACAGTAAATATGAGAGAAAAGTTCCTTC1260.10105871029836382No Hit
AGTGCTGGGGTTCCAGAAATTTAATTTTTGTCAATGCATCTGCAATTGATCA1260.10105871029836382No Hit
ATCGCCGGGGAAGGGGGCTGTATCAACATCAATTAGGGAACCAAAGTTGCAC1260.10105871029836382No Hit
AAGTGGGGGTTTTGAATATGTTTGGGTAAAACTCAAGACAAGACTATTTTTG1250.1002566570420276No Hit
TTTAAAGGGAGAGGTGTCTTGGTCTAGAATTGTACCTGCAGAGATGGTGAGA1250.1002566570420276No Hit
GTAACTGGGGTGCTTTTTTGTTTTATTATTATAGTAAATATTTTTAAAGTTG1250.1002566570420276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)