FastQCFastQC Report
Sat 31 Dec 2022
SRR5848072.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848072.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84641
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC2120.25046963055729493No Hit
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT1930.22802188064885814No Hit
TTACTAGGGGATCCGCAAAATGGCGCCTCGTGGTACCGGGTTTCCCGGGAGG1050.12405335475715079No Hit
TACTAGGGCAGGGTCAGACTGGCGCGATCTGCCCAACATCGAGGTGCGGCTC1010.1193275126711641No Hit
GTCAAAGGGGAAAATGAACAGTTCCAGATGAACAATTTGCACTCATGGGTGT1000.11814605214966742No Hit
TTAGTAGGGAGATGCTGACGGCTTCACACACCCTGGCTGTGGACGCCAAGAA960.11342021006368072No Hit
GCTACTGGGGTGTGGGTCGAGCAGCGGCGGCGGCGGCGGCAGTGGCGGTCCC940.11105728902068737No Hit
TATAACGGGTTCCAAACAAAACAAAACAAACCCTTTTTGCTCTTTTAGTACT920.10869436797769402No Hit
TAAGCTAGGGAACCTACCCTACTGCCATGACCTTCCGCACATCTCTAAGTTT920.10869436797769402No Hit
TATTCAGGGGATTGTTGGGCACATTCTTTCTAAGAAACAGATTAATTCCATT920.10869436797769402No Hit
GTGCGCGGGAGTGGCCTGACTTCTTGTCCCATGAGTCCCTCCTGCTTCTGCA910.10751290745619735No Hit
TAAAAGGGGAGAAGAGCAGGGAATGCTTCTTTAAGTACTTATTAGGGAGCAA910.10751290745619735No Hit
GCAGCAAGGGGATATAAGGAGAGGCAGCTCTATTTCTGGCTCTTCCATCAGA900.10633144693470067No Hit
AGATCAGGGCGATCTTGTATAGGGGCACATTTACGATGTGGAGAAGGACTGC890.105149986413204No Hit
ACAAACGGGGATTTAGCAAGTTCTAGAAGGTCTCCAAGACAATAATTACATT890.105149986413204No Hit
AGAACAGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG890.105149986413204No Hit
ATGTGAGGGGGCTGCAGTGCGAAGGGCTCGAAGATGGCCGGTTGGCAGAGCT880.10396852589170734No Hit
TTAATGGGGAGAGACCCACCTGTCAATGAAGGAGTGTCATTATCACATTGTT880.10396852589170734No Hit
TTGCACGGGCCCTAAATATATATACCTGTATTTTCCTAACTAAGCCAGTTAG870.10278706537021065No Hit
GCTTGAGGGGTCTGACCAGGCGGACCTGGTGAATGACCTGGGGAACAAAGGC870.10278706537021065No Hit
GCAACGGGGGTTTTCCAATCTGTCATTTACTTAAATTATTTTGGTTGTTTTT870.10278706537021065No Hit
TTCTCAGGGCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAG860.10160560484871399No Hit
GCGCTTGGGACTTCCATCCACTTTATCTGGTGATCTGATGAACAGCATGGGG860.10160560484871399No Hit
AGCCTTGGGATTGTCCCCCTACCCTAAATGCCCCCCTGCCATAACTTGGGGA860.10160560484871399No Hit
TTTCAAGGGTGACTGCCATCATCTTCGTGGTGGCCAGCAGCAGCTACAACAT850.1004241443272173No Hit
CCAAGTCTTCAGGCTCGTACTCAAGGTCAAGGTCGCGCTCCTGCTCCCGTTC850.1004241443272173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)