FastQCFastQC Report
Sat 31 Dec 2022
SRR5848071.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848071.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86241
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT2360.2736517433703227No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC1920.22263192680975408No Hit
ATGTATGGGGTAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAA1090.12639000011595414No Hit
TATTCAGGGGATTGTTGGGCACATTCTTTCTAAGAAACAGATTAATTCCATT1060.12291137625955172No Hit
AGATCAGGGCGATCTTGTATAGGGGCACATTTACGATGTGGAGAAGGACTGC1050.12175183497408425No Hit
TTAGTAGGGAGATGCTGACGGCTTCACACACCCTGGCTGTGGACGCCAAGAA1010.11711366983221437No Hit
TCAATGGGGCATGGAGCTCGTTTCAAAGGGCAAGATCTAAAACTGGCATGGA970.1124755046903445No Hit
GTATATGGGGGGAATATCCTTTTGGACGCAGAAGGCCACATCATCCACATCG950.11015642211940956No Hit
AGTCTTGGGGGTGGTGAGAGACGGACCGAGACCGGAGATGTTTTCAAGCCCG950.11015642211940956No Hit
GTGCGCGGGAGTGGCCTGACTTCTTGTCCCATGAGTCCCTCCTGCTTCTGCA930.10783733954847462No Hit
TTACTAGGGGATCCGCAAAATGGCGCCTCGTGGTACCGGGTTTCCCGGGAGG930.10783733954847462No Hit
GCTCAGGGGATCTCCTGGCAGGCAGCCATCTTCAAGGTGGGAGACGACTGCC920.10667779826300716No Hit
TGTGAGCGGGATAAAATGTGTGAGACAAAAACTTATTAAGGTTAAATAGAAT920.10667779826300716No Hit
GACGTGGGGGAAAGGAACCTTATTTACAGAAAAGACAATGGAAGCTGAGAAA910.10551825697753968No Hit
TAGTCCGGGGGAGTGATTTCAAGGAGTATGAAAAAGAACAGGATAAACCACC910.10551825697753968No Hit
CCTTTAGGGGGAAAGCGAAGATTGCACATTAGTTCTCCACAAGGTCTAACTC890.10319917440660474No Hit
TTTTATGGGTCTCACTAGGGGGTTTCTATTAGCTTTCTTTTTGCTGGTTTGC890.10319917440660474No Hit
ACTATAGGGAACTGAGTTGTAATAGAGAAGTAATTTATTTGAAATTATTTTA890.10319917440660474No Hit
TTTATAGGGCAGCTTCCTCTCTAAAAGGAAAAACTTGATATTTATCAGTCTG890.10319917440660474No Hit
TCAGGGGAAAATGAAAGTATGGCAAACCTTCTGCAAAATAGATATATTCCTT880.10203963312113729No Hit
CCCAGCTCTGCATTCTTGGGCAAGGTGGAATTTATAGCCTCTCAATGAAGCG880.10203963312113729No Hit
CGCGTAGGGGCTGCTGAGTTGCTCTGATTAACCCTAAATTTGTGAATTTAAG880.10203963312113729No Hit
ACTATTGGGATCCTGACACCATTCTCTCTCCATTTACTTCTGGTGGTTACCC880.10203963312113729No Hit
TCGGCATGGGAGGGGGTCCTGGAATCAATCCCCACAAATACTGAGCGACAAC880.10203963312113729No Hit
GCCATGAGTAAGTATAGAAATTTCAAAAAATGTATTTTCAAAAAATTATGTG870.1008800918356698No Hit
GGCTTTGGGATACCTCAATGAAAATCCCTTGAGGGCCTTGTACCTAATAGCA870.1008800918356698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)