FastQCFastQC Report
Sat 31 Dec 2022
SRR5848066.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848066.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70836
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT2670.3769269862781637No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC2610.36845671692359816No Hit
CTTTGCGGGAAAATTCCTACGGACATAAAATCCCACATGTTTGGGGGAAAAT920.12987746343667061No Hit
AAGTCTGGGGATAAAACAGTGGATGATCCACTGTTGCACAAAATTCTAGCAA900.12705404031848214No Hit
CGCTAAGGGGAAAGAATTACTTGACATTTTATTTACTAAAGTTCTTTTTGTT870.12281890564119939No Hit
TCGTTGGGGACGCTTACCAGCGGGGACACCAATGGCTGCATCAAATGCATGC860.12140719408210514No Hit
CACGCTGGATACAATGTGAGCTGAAAATTGGTTCTGAAGAGTTTGAAGAACT850.11999548252301089No Hit
GACAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA830.1171720594048224No Hit
GCTTGCGGGGACGCTCTTCCGATCTGAAGCTGGGATGAACCTCCAAGTATGT830.1171720594048224No Hit
GTCTTTGGGCATGGGCATAGGTTAAAAACCATGCCTGTAAGAACATCACTCT830.1171720594048224No Hit
ATGCTGGGGCACTTCCTTTCACTGTATACAAAAATTAACTCAAGATGGATTA820.11576034784572817No Hit
GCAACAGAGCTTCAACACTGCTCCAAATTCTATCTATTGCTAGTTTAAGCAC810.11434863628663391No Hit
CATATTGGGATTCAAAGAACATGGCAACCGTAACAGACAAAAGGAAGCATGG810.11434863628663391No Hit
GGCTCTGGGATTCATCATCTGACAAAGGTCTAATATCCAGTATCTATAAAAA800.11293692472753966No Hit
TAGTGCGGGGCTCGGCAGCCCTGAGAGCAGATGGCTTTGGAGACAATCCTTT800.11293692472753966No Hit
GCAGTAGGGGCTTCCGCGGCGGTTGGGGTGGTGGGGCCCCGGGCGGCGTTGA790.11152521316844544No Hit
GACACTGGGAAGGATATTTACCTATGAAAAAGTTGTTAAGAATAAAAATTAG790.11152521316844544No Hit
GGCCTTGGGATTGTGTACATTTTTCAATGTTTGGAATGTTATTTTACCTGTA790.11152521316844544No Hit
AATGGCGGGTAAGTATTCTTCACGGCAGCCAGAAGTTAATGGTGGTAGCAGC780.11011350160935118No Hit
CACTTTGGGGCCATGGTATTTTTAGATAACTCGTGATTATCTTAAGAGAGGT780.11011350160935118No Hit
GTACGAGGGACTGCTTTCTCTTTCTTAAGTAATCTTTGCCTGCTTCATAGTT770.10870179005025693No Hit
GGTAGTGGGGGAAAAATGCATTTACAGAAAGTCCCAGGACTTGAGAAGCAAG770.10870179005025693No Hit
GGTGTAGGGGGACTTGCTGTCTCTGGAAAAGAAAATAAACTGTGTACACCTG770.10870179005025693No Hit
TTCGAAGGGCTGCCACTGGGATAGCAATAAATCATGGAACCCAAATAAACAG770.10870179005025693No Hit
AGACCAGGGAAGAGGATAGGATAGTTTGAAAGAAAAATTTGGCAATTTTGGA760.10729007849116269No Hit
ACTCTCGGGGTAAGACCAAAAGGCCACCTGATTGAGGTAAAAGGAGGGAAGA760.10729007849116269No Hit
TTGCTGGGGATATCCCTGATGAACATCGATGTGAAAATCTTCAATAAGGTAC760.10729007849116269No Hit
TTTACTGGGGAGGACTGATACTAGAGTGGGTATCCCATCACTATTTACTTTT760.10729007849116269No Hit
CACAATGGGAACATGATTCTTCAGGAATGTTTTAGGTATTCTTGCCCTTTTA760.10729007849116269No Hit
TAGCGTGGGGGAGGCATGAAAAACATCAGCTCACCTAACCAGCTTCTTTTAG750.10587836693206844No Hit
TGTAGTGGGGGGCCAGGGTACAGAAAATGCAGTGTGGCAAAGGGCAGAGTGG750.10587836693206844No Hit
TCCGCGGGGGGCCGGGACTGGGCTGCTGGCGCTGCGGACGCTGCCAGGGCCC750.10587836693206844No Hit
CAGCTCGGGTATGAAATCAACCCTATATTTTATTTGAGTAGAAATTTATAAA740.1044666553729742No Hit
TGCGTTGGGGAGACAGTGACCCGGAAGTAGAAGTGGCCCTTGCAGGCAAGAG740.1044666553729742No Hit
TGTACGGGGGATGTCAAGGAAGAGGAGAAGGAGGAGAAAGAGGTCTTGCCAG740.1044666553729742No Hit
TTAGAGGGGTATTTCATCTTCCCGCATTGTGGACGCAAAGCTGGCGTAGCTA740.1044666553729742No Hit
TTGAGCTGGGAATTGGTGTCCCTGGAGATAAGAATGAAAATAATTAAATAAA730.10305494381387995No Hit
CAAGTCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC730.10305494381387995No Hit
TTCAGTGGGGAGGTGACGCTGCGGGGCGGGCGGACAGACTGCGGGACGGACG710.10023152069569147No Hit
AACACGGGGAAGAAAAATTTTTGGATCAATGTGTATGCACATTTAAAATTTT710.10023152069569147No Hit
ACGCCCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA710.10023152069569147No Hit
CTGAAGGGGAGATATAGACTGGTGAGTCTGGTCTTGTTCAGAGAACAATTAA710.10023152069569147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)