FastQCFastQC Report
Sat 31 Dec 2022
SRR5848065.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848065.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70823
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT3000.4235912062465584No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC2590.3657004080595287No Hit
CTTTGCGGGAAAATTCCTACGGACATAAAATCCCACATGTTTGGGGGAAAAT1040.14684495149880689No Hit
GGCCTTGGGATTGTGTACATTTTTCAATGTTTGGAATGTTATTTTACCTGTA1020.14402101012382984No Hit
GGCTCTGGGATTCATCATCTGACAAAGGTCTAATATCCAGTATCTATAAAAA960.13554918599889865No Hit
TAGAAGAGGGGAGGTCCTGCATTTCTCAGTCGGTGTGTAATCACGTTCCAGG950.13413721531141015No Hit
AAGTCTGGGGATAAAACAGTGGATGATCCACTGTTGCACAAAATTCTAGCAA930.13131327393643308No Hit
TCGTTGGGGACGCTTACCAGCGGGGACACCAATGGCTGCATCAAATGCATGC910.12848933256145603No Hit
TGTAGTGGGGGGCCAGGGTACAGAAAATGCAGTGTGGCAAAGGGCAGAGTGG870.12284144981150193No Hit
TCCGCGGGGGGCCGGGACTGGGCTGCTGGCGCTGCGGACGCTGCCAGGGCCC870.12284144981150193No Hit
GGAAAAGGGACCAGGGCACCTTTTCCATGGAAAGTGTTACAAAAATTGATTC850.12001750843652487No Hit
TTCAGTGGGGAGGTGACGCTGCGGGGCGGGCGGACAGACTGCGGGACGGACG840.11860553774903633No Hit
CACTAGGGGGAAGAAAAGAGAAAAGAGTGTAGATTTCAAAGTGCCTTTGTAC810.11436962568657076No Hit
GCAACAGAGCTTCAACACTGCTCCAAATTCTATCTATTGCTAGTTTAAGCAC790.1115456843115937No Hit
AACACGGGGAAGAAAAATTTTTGGATCAATGTGTATGCACATTTAAAATTTT790.1115456843115937No Hit
TCACTCGGGGGAATTTACTGTATGTTGCAGTAACTCGAGCCAAGAAGCGTCT780.11013371362410516No Hit
CACTTTGGGGCCATGGTATTTTTAGATAACTCGTGATTATCTTAAGAGAGGT780.11013371362410516No Hit
AATACTGGGAGAAGAAAACCTTAGTATGCATCAGATGCTGGATCAGACTTTA780.11013371362410516No Hit
ACATGCGGGATGGAAAGGAAATGAGAGGTTCTAAGAGGCGGGCTAGTGGCTT780.11013371362410516No Hit
CTTACTGGGATTGTGTGCTTTGCAATGCTTGTAAAAGTGTTTGCTGACTCTT770.10872174293661664No Hit
CAGCTCGGGTATGAAATCAACCCTATATTTTATTTGAGTAGAAATTTATAAA760.1073097722491281No Hit
TTTAAAGGGGGCCCTGTCATGTTTGGGAAATGACTAAATCTTCATTCTTCTC760.1073097722491281No Hit
TTCGAAGGGCTGCCACTGGGATAGCAATAAATCATGGAACCCAAATAAACAG760.1073097722491281No Hit
TTGGCTGGGTGGCCACGGGGATCTTGAAGCGGGAGCGTAGAGTGGAACGGGA760.1073097722491281No Hit
CAAGTCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC760.1073097722491281No Hit
GGGTCAGGGGAGTTAGCAAATTCAGTTTTTCCAAGATGCCCTGAAAGTATGA750.1058978015616396No Hit
GCAGTAGGGGCTTCCGCGGCGGTTGGGGTGGTGGGGCCCCGGGCGGCGTTGA750.1058978015616396No Hit
TCCACCGGGCAAGTAATAAACAATGAAATACCGTTTTACATTTACTTAATTA740.10448583087415104No Hit
AATACCGGGACTTTAAAGTGTGTGTGCCGGCATATATGATTTTGCTTTTTTT740.10448583087415104No Hit
GCATAGGGAAGAACATACACTGGGGAAAAGATAATGTCTTTAATAAATGGTG740.10448583087415104No Hit
AGACCAGGGAAGAGGATAGGATAGTTTGAAAGAAAAATTTGGCAATTTTGGA730.10307386018666254No Hit
ATGCCTGGGGGAAAATGGAACATCAGTTGTATACGCGGTAGGGAGTACCTGG730.10307386018666254No Hit
TTAACCGGGACTGGGCTTGCTTTCTTCCAGACCAGCAGAGTGCATCAAACTC730.10307386018666254No Hit
ACTCTCGGGGTAAGACCAAAAGGCCACCTGATTGAGGTAAAAGGAGGGAAGA730.10307386018666254No Hit
CGTCTGGGGATCTGCTCGCTGAGAAAGTCCTTGCTGGGAAATCGAAGATTGA730.10307386018666254No Hit
GCGGCTCCAGGCCCACCACGGACTCCGGTGGGACGTGGGTGGCGCAAGCACA730.10307386018666254No Hit
AATGTTGGGCGATCTGGGAATGGGATCGATCTGAGGTTTGCTAGAATCCTCT730.10307386018666254No Hit
ATACACGGGAAATGAACATGGGTATGCAAATATCTCTTTGAGATCCTGCTTT730.10307386018666254No Hit
CACTCCGGGAAACAACTGGTGGAAAAGAGCAATAAATTGCCCGGTGCTCTGC720.101661889499174No Hit
CTGCTTGGGAAACATGAAAATTAGTCAAAAATTGTTTTTGACATTTCTCATC720.101661889499174No Hit
CTGTCGGGGAAGTTGCAACTCAAGAAGGAAAAGAAATAACCTGTCGAAGTTA710.10024991881168548No Hit
AGAGCCGGGAGGGTTTTAATGATTTTCTGTTGACAACTTTTGCAATGCTTTC710.10024991881168548No Hit
ATAAATGGGAGAGATTGACTCGGCATTGCCTTCATTCCTTAAAATTAAAAAC710.10024991881168548No Hit
CCATCAGATCATGTTAGACAGAATAGACTTAATTAAATACCCCCTGATGGAG710.10024991881168548No Hit
AACATGGGGACATCTTTGCTTTTATTCTGTGCTCTCTGTACTTTTGACCAAA710.10024991881168548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)