FastQCFastQC Report
Sat 31 Dec 2022
SRR5848064.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848064.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70132
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT2520.35932242057833796No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC2310.32937888553014316No Hit
GGCCTTGGGATTGTGTACATTTTTCAATGTTTGGAATGTTATTTTACCTGTA1140.16255061883305766No Hit
AGACCAGGGAAGAGGATAGGATAGTTTGAAAGAAAAATTTGGCAATTTTGGA1020.14544002737694633No Hit
GGCTCTGGGATTCATCATCTGACAAAGGTCTAATATCCAGTATCTATAAAAA970.13831061427023325No Hit
GGAAAAGGGACCAGGGCACCTTTTCCATGGAAAGTGTTACAAAAATTGATTC890.12690355329949238No Hit
TCGTTGGGGACGCTTACCAGCGGGGACACCAATGGCTGCATCAAATGCATGC890.12690355329949238No Hit
TTCGAAGGGCTGCCACTGGGATAGCAATAAATCATGGAACCCAAATAAACAG880.12547767067814977No Hit
GCAACAGAGCTTCAACACTGCTCCAAATTCTATCTATTGCTAGTTTAAGCAC870.12405178805680717No Hit
CTTTGCGGGAAAATTCCTACGGACATAAAATCCCACATGTTTGGGGGAAAAT870.12405178805680717No Hit
ACTCTCGGGGTAAGACCAAAAGGCCACCTGATTGAGGTAAAAGGAGGGAAGA850.12120002281412194No Hit
AAGTCTGGGGATAAAACAGTGGATGATCCACTGTTGCACAAAATTCTAGCAA840.11977414019277934No Hit
ATACACGGGAAATGAACATGGGTATGCAAATATCTCTTTGAGATCCTGCTTT830.11834825757143673No Hit
CACAATGGGAACATGATTCTTCAGGAATGTTTTAGGTATTCTTGCCCTTTTA820.11692237495009412No Hit
GCTCATGGGCTGCTGCAGGATCAGCCTCTTGATGGAGATGAGGCTATTGGAC780.11121884446472366No Hit
CTGCTTGGGAAACATGAAAATTAGTCAAAAATTGTTTTTGACATTTCTCATC770.10979296184338105No Hit
GTACTGGCAGGTGCACATGGGGCCTCCAGGTCTACCATTCGCTATTGAGAAC760.10836707922203845No Hit
ATGCCTGGGGGAAAATGGAACATCAGTTGTATACGCGGTAGGGAGTACCTGG760.10836707922203845No Hit
GTCTTTGGGCATGGGCATAGGTTAAAAACCATGCCTGTAAGAACATCACTCT760.10836707922203845No Hit
GACAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA750.10694119660069584No Hit
CACGCTGGATACAATGTGAGCTGAAAATTGGTTCTGAAGAGTTTGAAGAACT750.10694119660069584No Hit
CATCAAGGGCTGCACCCAGATTTAGGGACTGATAAAGATAAGGAACAGTGGA750.10694119660069584No Hit
TTGTTAGGGGACATTCTCTATTGTAATTTTGTTCCTGTTTATTTTTAAATTT740.10551531397935324No Hit
TGCGCAGGGGAGGCCGTAGGAGGAAGATGGCGGTGGAGTCGCGCGTTACCCA740.10551531397935324No Hit
GGATCTGGGACCCTTTTCTTATTCTAGACTGTTTTTAAACTCAGTTATGCTT740.10551531397935324No Hit
TACACAGGGACATCTGATCCATAGTTCAGCACCAGATGATTTCTTTTACCTG730.1040894313580106No Hit
CACTTTGGGGCCATGGTATTTTTAGATAACTCGTGATTATCTTAAGAGAGGT730.1040894313580106No Hit
AAGACCAGAACTTGAAGTCCATTGATTTCTTGTAACCTCTGCTGAACACTCC720.102663548736668No Hit
TACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGG720.102663548736668No Hit
TAGAATGGGAATCTCCAGTGTGAATAACTTCATAAATTTTATCACTGTATAA710.10123766611532538No Hit
AACCAGGGATTTGCAGACAGACACAGTGGCATGTGGAGACAACAGTGTGTCC710.10123766611532538No Hit
TGTAGTGGGGGGCCAGGGTACAGAAAATGCAGTGTGGCAAAGGGCAGAGTGG710.10123766611532538No Hit
AGAGCCGGGAGGGTTTTAATGATTTTCTGTTGACAACTTTTGCAATGCTTTC710.10123766611532538No Hit
AATACTGGGAGAAGAAAACCTTAGTATGCATCAGATGCTGGATCAGACTTTA710.10123766611532538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)