FastQCFastQC Report
Sat 31 Dec 2022
SRR5848045.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848045.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118752
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC4240.35704661816222044No Hit
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT3680.30988951765022904No Hit
GTTACGGGGGCGGGCTCCGAGGAGTCGGCCGAGCTGCTCCCGCGCCCTGGCC1710.14399757477768796No Hit
GGACGGTGGCAGAAGTATCTCAAAGTAGGGAAAAAAAAGGGAGAGAGAGAGA1640.13810293721368902No Hit
CTCAAAGGGATTGAGCATTCACCTCAGTGTCAGGCACCATGAAGTACTTTCA1570.1322082996496901No Hit
GGCACTGGGTCTATAAGCGGGGAAAAAGAAACAAAATGTCTTCATACTTTAG1500.1263136620856912No Hit
CTGGCAAGGCCTCCTAGAACTGAATTCCCAGAAAAGAGTAGGAAGGGTAAAT1450.12210320668283481No Hit
TCAAATGGGGGTGGCTGAGACACTCTCCTCACTCCCGGCCGAGCCAGCCAGA1440.12126111560226355No Hit
TGATATGGGAATGAAGTTGCTTGTTAAAAGACAGAGGTTGACAGATTGCATT1440.12126111560226355No Hit
GCAGGTGGGGAATCACAGTACTTTCCAGCAGTCAGTCCCTGGTTCCTAGATG1440.12126111560226355No Hit
GCTTTCGGGATGGAGCAAAGTTGCAAAAGTCTTTTCCAACTTGTTAGAGACT1430.12041902452169227No Hit
CTGTAATGGGATTGGTTCTTGTTGTGATAGGTTTCTGATTTGTATCCTTTGC1410.11873484236054972No Hit
TTTACAGGGGCTCTGTTTTTCCACACATGGACTGTTTCATCAGTAACAGTGT1410.11873484236054972No Hit
AAACAAGGGGGGGTGTTGACATAAAGTGGACCACACACCACATCTGCTGCCG1410.11873484236054972No Hit
GGCAATGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1390.11705066019940717No Hit
TTTGGGGGATTTCCTAAAAACTAAGACCGATAGCTTCTTATGATTATTCTCC1380.1162085691188359No Hit
GTGCCTGGGGCGTCCGGGGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGA1370.11536647803826461No Hit
GCTTCTGGGAAACAAGAAAAAGAAAACTAGATCCCTAACTACATACAAAAGT1370.11536647803826461No Hit
AGTTTGGGGGATTCCGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCA1370.11536647803826461No Hit
AGCACAGGGTTTGGAAACCAGTGCTAAGAATGCAACGAATGTAGAACAGTCT1370.11536647803826461No Hit
AGACACGGGATCCCGACCAGTTGCGTGATTGACACACTACTTTCAGGCATTG1370.11536647803826461No Hit
TACCACGGGTCTCCCCCATTTTCTGGAAAAAAAAGATGTCTTTGGAAGTGCA1360.11452438695769335No Hit
TGACACGGGGGTGGCCCCGGATGCTGCGGCGCCCGCTGGCCGGGCTGGCTGC1350.11368229587712206No Hit
CTAAACGGGAGGCGACTGCCACCACACCCAGCTAATTTTTTGTATTTTTAGT1340.1128402047965508No Hit
ATGGCTGGGTAAAAATCATAAGCAAATACCTCTAAATGAGCTGAAAGAAAAT1330.11199811371597952No Hit
AGCTCGGGCAAGTAGAGTCTGGCAGTATTAGTTTCCCCCACAAACAAATTCA1330.11199811371597952No Hit
ATGAAAGGGATGGCTAAAATGCATATAATTTTTGTAAAGCTGTGAATACAGC1330.11199811371597952No Hit
TAGTCTGGGATGGGTGGTGACTTTTCAGGAAAGAACCAAGATTGTTCTAAAG1320.11115602263540826No Hit
TTTGCCGGGGGATCTCGATATTTCAGATGGGCTTTTGATGCACTGTTGCCAA1320.11115602263540826No Hit
ACTCATGGGACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAG1320.11115602263540826No Hit
TTGAGGGAAGGGAGGGAAGTTGAAAGCCTTAAATTCAAAGATACCAAAATTA1320.11115602263540826No Hit
GGATACGGGCTCTTTTCATCAAGATGAAGGCTGTTGGGTAAGAAAAACTAAG1320.11115602263540826No Hit
GACAATGGGCTTGAACTTTCACATGAGTTTTACAATGAGCTTGTCAGTTCCT1310.11031393155483697No Hit
ATTGAGGGGCCCAAGCTGGTGTCTCGCTAAGTCATATGCACCCCAAGTCTCT1310.11031393155483697No Hit
AATGGTGGGATCTCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCCAGT1310.11031393155483697No Hit
AGATGCGGGAAATGGCTCATGAGCGCAGGACACTTATGGTCTTGTGTCCTAT1310.11031393155483697No Hit
GCAACTGGGCGATCTTCGCGAGGGGGACAAGGCTGCAGGTTCCCTAGGCACT1300.10947184047426568No Hit
GACCGCGGGATCTTAGATGTGTAATTTATGAACTACTACTGGATTATTTTAA1300.10947184047426568No Hit
CATACAGGGAGAATTCAAATCTACAACTTGTTCTTCAGGCATTTTGATTTCC1300.10947184047426568No Hit
AGCCAGGGGGCATCTTGGGAAGCACTCAGACTTAAAGGTTTCTCAGATCTTC1300.10947184047426568No Hit
AACACGGGGATTATGCGTCAACTAAAAATAAAAGGACAAAAGTACTATGCTG1290.10862974939369442No Hit
GGAGCCGGGAGGTCTGGGAACAATCCTCTCCAGGTCTTCACACAGAGTATCA1290.10862974939369442No Hit
CTGAAAATGGGTACGCATGATGCTTATTTCTCTCCTTTTTGAGTATTGTAGA1290.10862974939369442No Hit
ATATCGGGGGTGGAAGGGAGGAAGTAGAGCTGTGACAGATATATTGCCAGAT1290.10862974939369442No Hit
CGGCATAGGGAAGGACTTGGAGGCCCTGATGTTTGATCGCTCCTTTGTGGGG1290.10862974939369442No Hit
GGCCTTGGGACAAATCAGGAATTGTAGTACCAATATCCCAATCCCTAACAAT1280.10778765831312315No Hit
TTGTCAGGGCACCATAGTTCAAATCAACTTGCCTTCTCAAATCTATTATCCT1280.10778765831312315No Hit
TTTTGAGGGCACTTACAAATATTCATAAGTGTTCATTTATAAATATTCATAA1280.10778765831312315No Hit
AACAATAGGGTCTTTGAACAAACTTTTAAACCAACGTGATATAAACAATTTA1280.10778765831312315No Hit
TATAACGGGGAAGTATAAAAAGAAAAATACTACAAGTCTCACACCAATAGTG1280.10778765831312315No Hit
CATACGGGGCATGAGATGGTTTGATGGTTTGCTGCATTAAAGGTATTTGGGC1270.10694556723255189No Hit
ACAGCAGGGGAAAACACAATCCTAAAATTTATATGGGAACCACAAAAGACTT1270.10694556723255189No Hit
TTCAATGGGACCATCCCAGGCATTTATTTTGAGCCAGACTGTAGCAGTGAAG1270.10694556723255189No Hit
TCACATGGGTAATGCAGTTTGTTCTGTAACTCGAGAGCCAGTAGCATTGGAT1260.1061034761519806No Hit
GCCCGAGGGATGGGAGCAGATTCCTTTGACAACATCAAGAGGAAACTTGACA1260.1061034761519806No Hit
GGGTAAGGGATAGTTGAAAAAAGAAGTTTGGGCTAACATTTAGGAGAAGTTG1260.1061034761519806No Hit
TCTAGGTGGGCAGTTCTAACCAGTAAACTGGCCAGGAAAAATAAGAAAATAG1250.10526138507140934No Hit
CTCACCAGGGATGTTTTAATCACTCTTGCCATTACCTACATCTATTAGCATA1250.10526138507140934No Hit
ATGCATGGGAGTTTCCTGTTTGTGAGTTAATAGTCCTTTTGAAAATTTGACT1240.10441929399083805No Hit
GAACTAGGGGCTGGGATCCTGTCCCAGGGTCTTCGGATAGCCCCGCCTGAAG1240.10441929399083805No Hit
ATGACTGGGGTGGGCTCCAAGTTCTGGGAGCAGAGTGTGCGGCTAGGCTCCT1240.10441929399083805No Hit
GGTCTAGGGCATGGAGAATCCCTAAGTTGCATTTTAGCCTTCATGTTATGTC1230.10357720291026677No Hit
CAATTGGGGATAAGAATTACAGCAGACTCCTTACTAGAGGTTATGCAAGCCA1230.10357720291026677No Hit
TCTTGTGGGATCTTACACGGGGTAACGTTTCCTTTCTAGGGGAAGGGTCGAG1230.10357720291026677No Hit
TTTAATGGGAACCACGGTTATTTAAGCATAATCTGAAAACATCTAGCCCAAA1230.10357720291026677No Hit
ACTGGGAGAGCTAGTTCTCAAAGCTGCCCTGCCTGTTTTAGGAGGCGTTCCA1230.10357720291026677No Hit
ACAAGGGGGATTTCTGTTAAAAACTAGGCCTTGTGTGCCAGAGTCAATGAAT1230.10357720291026677No Hit
GTCTGAGGGACGGGGTCATTCTCAGGGTATACTCAGGTCGCATTATCACTGT1230.10357720291026677No Hit
AATTTAGGGGTAGTTTGGTGCTTTGTTCCAAGTTAAGTGTTTTCAGAAAAGT1220.10273511182969551No Hit
GTAATGGGGCAGTGGGAGACAGGATGTCCATGTTCTCTACCATCCTTTTCCT1220.10273511182969551No Hit
AACTCAGGGAACTTGCGCAGAAAACAAGATGAGATTGGCATGGCTTTATTTG1220.10273511182969551No Hit
ATGACTGGGGGCTTTGCTGCTGCAGCAAGGGCTACTGCCACACAGTAGCTGT1220.10273511182969551No Hit
ATAAGTGGGAGAATTTCCTTACCTGAAGGCACAACACTCTGAAACTTTAAAG1220.10273511182969551No Hit
TAATACGGGCTATCACACAAATTCAGCTGCACCCCTAAAGGTCTTCAGAAGA1220.10273511182969551No Hit
CTATAAGGGGGCGCTTCGCAAACGTGCCCTATCCGTGCGGCTTGGCTGCGCC1220.10273511182969551No Hit
TGGCCGGGCCGATCTGCGTGGGGGATCTGTCCTTTCCCAGCCTCGCTGGTAG1220.10273511182969551No Hit
TTTGTCGGGGAAACAAGCTGGAAAACGCATTTCAGGATATTACCCAGGAGAA1210.10189302074912422No Hit
GTGCGAGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAACA1210.10189302074912422No Hit
TGCCTCGGGACATGACAGATGGGTGCGTCTGTCATCCCAGTGTGAGATAAGA1210.10189302074912422No Hit
GAAAGGGGGAGACGCCACCGCCGAGGAAAACCGTGTACTATTAGCCATGGTC1210.10189302074912422No Hit
GTTAAAGGGGAGTGTGGCAAGGCCTTCCGCCAGCGGCCTACGCTCACGCAGC1200.10105092966855296No Hit
AAAAGAGGGAAGACACAGAGAGAGACATTGAGATGAAACGGCAACTACGGCG1200.10105092966855296No Hit
GTATGAGGGATGTCACAAACTAGGTGGCCTGAAACAACAGAAATTGATTCTT1200.10105092966855296No Hit
TTCGCGGGAGTGAATGTAGCTTTCAATAATCTTCATTGAAATGATCAGAAAT1190.10020883858798167No Hit
TCGCCTGGGGGGAACTGGCGGCGATCCCGAGGCAGGGAGGAGCCGGTGGTGC1190.10020883858798167No Hit
AGCGTAGGGGCCTGCAGCTGACCCTGTACCAGTACAAGACGTGTCCCTTCTG1190.10020883858798167No Hit
CGCTCAGGGGTTAGTAAAATATCCAAATGAAAGTGTGCAGCAGGCAGTTGGG1190.10020883858798167No Hit
GAAACGGGGTATTGTGAGAAGGGTCAGGTTGGAAGGGGTGTAGGAAGAGGGG1190.10020883858798167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)