FastQCFastQC Report
Sat 31 Dec 2022
SRR5848044.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848044.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118780
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT3920.3300218892069372No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC3710.3123421451422798No Hit
TTGAGGGAAGGGAGGGAAGTTGAAAGCCTTAAATTCAAAGATACCAAAATTA1880.15827580400740865No Hit
TCAAATGGGGGTGGCTGAGACACTCTCCTCACTCCCGGCCGAGCCAGCCAGA1710.14396363024078127No Hit
CATACAGGGAGAATTCAAATCTACAACTTGTTCTTCAGGCATTTTGATTTCC1620.13638659707021383No Hit
TTTGTCGGGGAAACAAGCTGGAAAACGCATTTCAGGATATTACCCAGGAGAA1600.13470281192119885No Hit
TGGCCGGGCCGATCTGCGTGGGGGATCTGTCCTTTCCCAGCCTCGCTGGTAG1600.13470281192119885No Hit
CTCAAAGGGATTGAGCATTCACCTCAGTGTCAGGCACCATGAAGTACTTTCA1580.13301902677218386No Hit
CTGGCAAGGCCTCCTAGAACTGAATTCCCAGAAAAGAGTAGGAAGGGTAAAT1580.13301902677218386No Hit
GGACGGTGGCAGAAGTATCTCAAAGTAGGGAAAAAAAAGGGAGAGAGAGAGA1580.13301902677218386No Hit
ATAGGCGGGCTCCACTCAAAGCTTGAAGCGTGTTGGGGTCTCCTCTTCTCTG1570.13217713419767638No Hit
GCTTCTGGGAAACAAGAAAAAGAAAACTAGATCCCTAACTACATACAAAAGT1560.1313352416231689No Hit
GGCCTTGGGACAAATCAGGAATTGTAGTACCAATATCCCAATCCCTAACAAT1540.1296514564741539No Hit
AATTTAGGGGTAGTTTGGTGCTTTGTTCCAAGTTAAGTGTTTTCAGAAAAGT1530.1288095638996464No Hit
TGATATGGGAATGAAGTTGCTTGTTAAAAGACAGAGGTTGACAGATTGCATT1520.12796767132513892No Hit
GCTCCCGGGAAAAATGCAAACTCCTCAGTATGAATTCCTCTCCTTCAGTTGC1510.1271257787506314No Hit
GTGCCTGGGGCGTCCGGGGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGA1510.1271257787506314No Hit
GACCGCGGGATCTTAGATGTGTAATTTATGAACTACTACTGGATTATTTTAA1480.12460010102710893No Hit
TTTGGGGGATTTCCTAAAAACTAAGACCGATAGCTTCTTATGATTATTCTCC1470.12375820845260145No Hit
TTTACAGGGGCTCTGTTTTTCCACACATGGACTGTTTCATCAGTAACAGTGT1470.12375820845260145No Hit
CATATAGGGAGTTTAAATTCAAGGCTGGACCACTCAGTTATTATTGCTATTA1420.119548745580064No Hit
GTTGATGGGCATTTTTGAAAGGAGCTTAGAAGTGAACTATCTCATACCTAGC1410.11870685300555649No Hit
CATACGGGGCATGAGATGGTTTGATGGTTTGCTGCATTAAAGGTATTTGGGC1400.117864960431049No Hit
TTTGCCGGGGGATCTCGATATTTCAGATGGGCTTTTGATGCACTGTTGCCAA1390.1170230678565415No Hit
TTTAATGGGAACCACGGTTATTTAAGCATAATCTGAAAACATCTAGCCCAAA1390.1170230678565415No Hit
TGACACGGGGGTGGCCCCGGATGCTGCGGCGCCCGCTGGCCGGGCTGGCTGC1390.1170230678565415No Hit
CGGCATAGGGAAGGACTTGGAGGCCCTGATGTTTGATCGCTCCTTTGTGGGG1390.1170230678565415No Hit
TCGCCGGGAGCCAAGGCATGTAAGCAGCATCTAGATGCCACAAATGATAAGA1380.11618117528203402No Hit
GTATGAGGGATGTCACAAACTAGGTGGCCTGAAACAACAGAAATTGATTCTT1370.11533928270752651No Hit
GGAGCCGGGAGGTCTGGGAACAATCCTCTCCAGGTCTTCACACAGAGTATCA1350.11365549755851154No Hit
ATGACTGGGGTGGGCTCCAAGTTCTGGGAGCAGAGTGTGCGGCTAGGCTCCT1350.11365549755851154No Hit
CTGAAAATGGGTACGCATGATGCTTATTTCTCTCCTTTTTGAGTATTGTAGA1340.11281360498400404No Hit
ACTCATGGGACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAG1340.11281360498400404No Hit
AGGAGCGGGATGTCTGTGGCTTCCTGTCAAAAGTGTATAAACTGAATCTCAG1330.11197171240949655No Hit
CTGTAATGGGATTGGTTCTTGTTGTGATAGGTTTCTGATTTGTATCCTTTGC1330.11197171240949655No Hit
AAAAGAGGGAAGACACAGAGAGAGACATTGAGATGAAACGGCAACTACGGCG1330.11197171240949655No Hit
AATGGTGGGATCTCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCCAGT1330.11197171240949655No Hit
TATAACGGGGAAGTATAAAAAGAAAAATACTACAAGTCTCACACCAATAGTG1330.11197171240949655No Hit
CTGCTGGGGACTGAAAGATATTAAAAAAAGTTTTCCTTATCTAGTAAGTATT1330.11197171240949655No Hit
ATATCGGGGGTGGAAGGGAGGAAGTAGAGCTGTGACAGATATATTGCCAGAT1320.11112981983498904No Hit
TAGTCTGGGATGGGTGGTGACTTTTCAGGAAAGAACCAAGATTGTTCTAAAG1310.11028792726048156No Hit
GTGCGAGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAACA1310.11028792726048156No Hit
AAACAAGGGGGGGTGTTGACATAAAGTGGACCACACACCACATCTGCTGCCG1310.11028792726048156No Hit
AGCACAGGGTTTGGAAACCAGTGCTAAGAATGCAACGAATGTAGAACAGTCT1310.11028792726048156No Hit
GCAGGTGGGGAATCACAGTACTTTCCAGCAGTCAGTCCCTGGTTCCTAGATG1310.11028792726048156No Hit
TCTACCGGGACTCGCGTCTGGCTACCAGCTCCCCGCTGCCCTGAGCTCGGCG1300.10944603468597405No Hit
ACAAATGGGGCAGTAGGCTCCTCGGGCTGCCCCTCGGTTGACAATGGTCTCC1290.10860414211146657No Hit
TTCAAAGGGATAGTTGTTCAATCATAGCCAGCAGTTCCAGAGCATTCTTATC1290.10860414211146657No Hit
TGAATGGGGGGTCTGCAGCTCTGGGCCCCCAGCCCCACTGTGAAGTCAGTCC1280.10776224953695909No Hit
GGCTATGGGATCCTTAGAAGCTATGAGCCTGGCCTTTGAAAAGTTTATAACT1280.10776224953695909No Hit
TTCAATGGGACCATCCCAGGCATTTATTTTGAGCCAGACTGTAGCAGTGAAG1280.10776224953695909No Hit
TCTAGGTGGGCAGTTCTAACCAGTAAACTGGCCAGGAAAAATAAGAAAATAG1270.10692035696245158No Hit
GAAAGGGGGAGACGCCACCGCCGAGGAAAACCGTGTACTATTAGCCATGGTC1270.10692035696245158No Hit
TGGTCAGGGAATCCCATGCATGCCAAACACTTTTCACACCTACCGACCCATT1270.10692035696245158No Hit
AACACGGGGATTATGCGTCAACTAAAAATAAAAGGACAAAAGTACTATGCTG1260.1060784643879441No Hit
TTGACCGGGCATAAATCCAAGGGGAGGAGAAATAAACCCCACTAGTTATGCA1260.1060784643879441No Hit
GGCAATGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1260.1060784643879441No Hit
GTTACGGGGGCGGGCTCCGAGGAGTCGGCCGAGCTGCTCCCGCGCCCTGGCC1260.1060784643879441No Hit
GAACTAGGGGCTGGGATCCTGTCCCAGGGTCTTCGGATAGCCCCGCCTGAAG1260.1060784643879441No Hit
AGCTCGGGCAAGTAGAGTCTGGCAGTATTAGTTTCCCCCACAAACAAATTCA1260.1060784643879441No Hit
TAGGCTGGGCGCTCTTCCGATCTTAATGTGGGGTATGTTAGCATTTTTGTAG1260.1060784643879441No Hit
AATCTTGGGGGCCATCTATGACATCTGTCGTAGAAACCTCGATATTGAGCGT1260.1060784643879441No Hit
GGATACGGGCTCTTTTCATCAAGATGAAGGCTGTTGGGTAAGAAAAACTAAG1260.1060784643879441No Hit
GCAACTGGGCGATCTTCGCGAGGGGGACAAGGCTGCAGGTTCCCTAGGCACT1250.1052365718134366No Hit
GTTAAAGGGGAGTGTGGCAAGGCCTTCCGCCAGCGGCCTACGCTCACGCAGC1250.1052365718134366No Hit
GTAATAGGGGTGTGTGTCTGTGTTTTACAATTAGAAGTAAATCAGTGAGCTC1250.1052365718134366No Hit
TAATACGGGCTATCACACAAATTCAGCTGCACCCCTAAAGGTCTTCAGAAGA1250.1052365718134366No Hit
ATGCAGGGGTCATGTCTGACTGGGAGAGGTTTCCTTGGCAGCAGAGGACGCT1250.1052365718134366No Hit
CTCTTAGAGGGATTCAAGTGCTTGAAATTTCCAAGAGTATGTCTGTATAAGT1250.1052365718134366No Hit
CTGTTTGGGACAAGCGATTAAAAGTAGATGCCAGGCCACATAAAAATAAATG1240.10439467923892912No Hit
GACAGTGGGGCCTTATGTTTTTTAAGTGTTTTTTTAAATTCTTCATAGTTGA1240.10439467923892912No Hit
CACGTGGGTACCCTAAACTAGGATAATAATACTCTAGTCCATGAAATTGTAA1240.10439467923892912No Hit
GTAGCTGGGAGGAGAATTTGGGAAACATTTATCTGATTTAATTAATTATAGA1230.10355278666442164No Hit
ATGGCAGGGACTTGGAGGAACTTCCTACAATGATGCAGCACTTCTCACAGTT1230.10355278666442164No Hit
CTCTGTGGGCTAAGCAAACACCCAGATGGGGTTCTCTGGTCTCAGCAAGGCT1230.10355278666442164No Hit
ACAGCAGGGGAAAACACAATCCTAAAATTTATATGGGAACCACAAAAGACTT1230.10355278666442164No Hit
ATGCATGGGAGTTTCCTGTTTGTGAGTTAATAGTCCTTTTGAAAATTTGACT1220.10271089408991413No Hit
CAATTGGGGATAAGAATTACAGCAGACTCCTTACTAGAGGTTATGCAAGCCA1220.10271089408991413No Hit
AGCCAGGGGGCATCTTGGGAAGCACTCAGACTTAAAGGTTTCTCAGATCTTC1220.10271089408991413No Hit
GTCCAAGGGTCATGCTTTTCTCATGGTATTATCTAGTAGGTCTGCACACATA1210.10186900151540665No Hit
GAACGGGGTTGCTATTAGTGGGCACTCTAATTGTGTTCGTCACGGATCCTTG1210.10186900151540665No Hit
GTAATGGGGCAGTGGGAGACAGGATGTCCATGTTCTCTACCATCCTTTTCCT1210.10186900151540665No Hit
GACAATGGGCTTGAACTTTCACATGAGTTTTACAATGAGCTTGTCAGTTCCT1210.10186900151540665No Hit
CGTGACGGGCAAACTCAGACACGAAAACCAGAACTGCATCAGGATATGGTGG1210.10186900151540665No Hit
TGCTTTGGGCATTTTGGGTACTGGGCTGTCTTGTCACTGAGCCCTATCCCTT1210.10186900151540665No Hit
CGCTCAGGGGTTAGTAAAATATCCAAATGAAAGTGTGCAGCAGGCAGTTGGG1210.10186900151540665No Hit
GTTTAGGGGATTTTCTTTTCCCTACACCTTTCCTAATAACATATTCTTTTCT1200.10102710894089914No Hit
AGTTTGGGGGATTCCGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCA1200.10102710894089914No Hit
ACTGGGAGAGCTAGTTCTCAAAGCTGCCCTGCCTGTTTTAGGAGGCGTTCCA1200.10102710894089914No Hit
GCCCGAGGGATGGGAGCAGATTCCTTTGACAACATCAAGAGGAAACTTGACA1200.10102710894089914No Hit
TATGCGGGGACTGAAATTTCAGCATTGAATTTTCGCATTAGAGCCTGAATAG1200.10102710894089914No Hit
AGACACGGGATCCCGACCAGTTGCGTGATTGACACACTACTTTCAGGCATTG1200.10102710894089914No Hit
CACTTTTGGGCGATCTGCTGTGGGGCTTGGGTAAAAATGATGTTGGGAAAGA1190.10018521636639165No Hit
TGCCTCGGGACATGACAGATGGGTGCGTCTGTCATCCCAGTGTGAGATAAGA1190.10018521636639165No Hit
TAAGTGCGGGACCTAATGCAGGCCGAGGTCTGGTACGACTGGAGTACCGGCA1190.10018521636639165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)