FastQCFastQC Report
Sat 31 Dec 2022
SRR5848043.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848043.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116749
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC4300.36831150588013606No Hit
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT3730.3194888178913738No Hit
GCTTCTGGGAAACAAGAAAAAGAAAACTAGATCCCTAACTACATACAAAAGT1670.14304191042321562No Hit
TGATATGGGAATGAAGTTGCTTGTTAAAAGACAGAGGTTGACAGATTGCATT1620.1387592184943768No Hit
TTTACAGGGGCTCTGTTTTTCCACACATGGACTGTTTCATCAGTAACAGTGT1550.1327634497940025No Hit
TTTGGGGGATTTCCTAAAAACTAAGACCGATAGCTTCTTATGATTATTCTCC1540.13190691140823477No Hit
AATTTAGGGGTAGTTTGGTGCTTTGTTCCAAGTTAAGTGTTTTCAGAAAAGT1520.13019383463669926No Hit
GGACGGTGGCAGAAGTATCTCAAAGTAGGGAAAAAAAAGGGAGAGAGAGAGA1510.1293372962509315No Hit
CTCAAAGGGATTGAGCATTCACCTCAGTGTCAGGCACCATGAAGTACTTTCA1490.12762421947939598No Hit
AGCACAGGGTTTGGAAACCAGTGCTAAGAATGCAACGAATGTAGAACAGTCT1490.12762421947939598No Hit
TGGCATGGGAAGGACCGAAAGGTTCGGCGCAAGGAGCCCAAGAGCCAGGATA1460.1250546043220927No Hit
TTTCTGGGGCCAGTCACATTGCTAATACATGTATATTTTTGTTTTTATTTTG1410.12077191239325391No Hit
TAGTCTGGGATGGGTGGTGACTTTTCAGGAAAGAACCAAGATTGTTCTAAAG1410.12077191239325391No Hit
ATGGCTGGGTAAAAATCATAAGCAAATACCTCTAAATGAGCTGAAAGAAAAT1400.11991537400748616No Hit
TCAAATGGGGGTGGCTGAGACACTCTCCTCACTCCCGGCCGAGCCAGCCAGA1400.11991537400748616No Hit
GGGTAAGGGATAGTTGAAAAAAGAAGTTTGGGCTAACATTTAGGAGAAGTTG1400.11991537400748616No Hit
GCTTGAGGGGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGG1380.11820229723595063No Hit
GGCCTTGGGACAAATCAGGAATTGTAGTACCAATATCCCAATCCCTAACAAT1370.11734575885018288No Hit
CAAGTAGGGTATCATAACAAAAATACTACTAATATAACTACTGTTTCCATGT1370.11734575885018288No Hit
AAACAAGGGGGGGTGTTGACATAAAGTGGACCACACACCACATCTGCTGCCG1360.11648922046441511No Hit
TTCAAAGGGATAGTTGTTCAATCATAGCCAGCAGTTCCAGAGCATTCTTATC1350.11563268207864735No Hit
GTTACGGGGGCGGGCTCCGAGGAGTCGGCCGAGCTGCTCCCGCGCCCTGGCC1340.11477614369287961No Hit
TTGTCAGGGCACCATAGTTCAAATCAACTTGCCTTCTCAAATCTATTATCCT1330.11391960530711183No Hit
ATTAACGGGGTGCTCCTGAGATTAGTTCAGATGGTCTAACCATTGTTCTATA1330.11391960530711183No Hit
CTGCTAAAAATACAGGGAATTAGCCGGGTGTGGTGGCGCACGTCTCTGGTTC1330.11391960530711183No Hit
TGACACGGGGGTGGCCCCGGATGCTGCGGCGCCCGCTGGCCGGGCTGGCTGC1330.11391960530711183No Hit
GGCACTGGGTCTATAAGCGGGGAAAAAGAAACAAAATGTCTTCATACTTTAG1330.11391960530711183No Hit
AGGAGCGGGATGTCTGTGGCTTCCTGTCAAAAGTGTATAAACTGAATCTCAG1320.11306306692134409No Hit
GACCGCGGGATCTTAGATGTGTAATTTATGAACTACTACTGGATTATTTTAA1310.11220652853557633No Hit
CTGGCAAGGCCTCCTAGAACTGAATTCCCAGAAAAGAGTAGGAAGGGTAAAT1310.11220652853557633No Hit
TCTACCGGGACTCGCGTCTGGCTACCAGCTCCCCGCTGCCCTGAGCTCGGCG1310.11220652853557633No Hit
ACTTTCGGGTATTCAAGTATTTGATCAGTAAGTCACAGTTATCTCCAGTGCA1300.11134999014980856No Hit
GAACTAGGGGCTGGGATCCTGTCCCAGGGTCTTCGGATAGCCCCGCCTGAAG1300.11134999014980856No Hit
GCAACTGGGCGATCTTCGCGAGGGGGACAAGGCTGCAGGTTCCCTAGGCACT1300.11134999014980856No Hit
AGCTCGGGCAAGTAGAGTCTGGCAGTATTAGTTTCCCCCACAAACAAATTCA1300.11134999014980856No Hit
TTGAGGGAAGGGAGGGAAGTTGAAAGCCTTAAATTCAAAGATACCAAAATTA1300.11134999014980856No Hit
TATAACGGGGAAGTATAAAAAGAAAAATACTACAAGTCTCACACCAATAGTG1300.11134999014980856No Hit
GACAGCGGGTGAACCTCCAGCAAATAGCAAGTCCAGGAAAAACTCTTCTCAT1290.11049345176404081No Hit
ACGATTGGGTGATAAGAGGGTTGTGTTGGTGGCACCTCCACTACTCTTTTCT1280.10963691337827304No Hit
AGATGCGGGAAATGGCTCATGAGCGCAGGACACTTATGGTCTTGTGTCCTAT1280.10963691337827304No Hit
GACAATGGGCTTGAACTTTCACATGAGTTTTACAATGAGCTTGTCAGTTCCT1270.10878037499250529No Hit
GCTTTCGGGATGGAGCAAAGTTGCAAAAGTCTTTTCCAACTTGTTAGAGACT1270.10878037499250529No Hit
CAATTGGGGATAAGAATTACAGCAGACTCCTTACTAGAGGTTATGCAAGCCA1260.10792383660673753No Hit
AATGGTGGGATCTCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCCAGT1260.10792383660673753No Hit
TGGCCGGGCCGATCTGCGTGGGGGATCTGTCCTTTCCCAGCCTCGCTGGTAG1260.10792383660673753No Hit
CTGCTGGGGACTGAAAGATATTAAAAAAAGTTTTCCTTATCTAGTAAGTATT1250.10706729822096976No Hit
ATGCATGGGAGTTTCCTGTTTGTGAGTTAATAGTCCTTTTGAAAATTTGACT1240.106210759835202No Hit
GCAGGTGGGGAATCACAGTACTTTCCAGCAGTCAGTCCCTGGTTCCTAGATG1240.106210759835202No Hit
TGAAGGAGGGACTCAGTTTGGTTTCTAAACTGAATCTGCTTTCATTGCAGGG1230.10535422144943427No Hit
ATATCGGGGGTGGAAGGGAGGAAGTAGAGCTGTGACAGATATATTGCCAGAT1230.10535422144943427No Hit
CATATAGGGAGTTTAAATTCAAGGCTGGACCACTCAGTTATTATTGCTATTA1230.10535422144943427No Hit
AGCCGAGGGGTTCCTGTTATTTATGAACGGCATCAGGCACAGATAGATCATT1230.10535422144943427No Hit
TAGTCCGGGAAGTAAAGGCAGAAAAGATTATATGTCATACCTCCATTGGGGA1230.10535422144943427No Hit
GTGCCTGGGGCGTCCGGGGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGA1220.1044976830636665No Hit
CGTGGTGGGGAAAGACTTTTAAACATCACCAACAGTAGCTGCCTCATTTTGC1220.1044976830636665No Hit
ATTTCAGGGGAGCAATCGTGTATAAGCTAATGTTTAAAAGCAAAACTGCAAA1210.10364114467789874No Hit
AATCTTGGGGGCCATCTATGACATCTGTCGTAGAAACCTCGATATTGAGCGT1210.10364114467789874No Hit
CTGAAAATGGGTACGCATGATGCTTATTTCTCTCCTTTTTGAGTATTGTAGA1210.10364114467789874No Hit
ACATATGGGCACCCTCTGAGGCATCATTTGCTAGGAAGAAAATGCTTTTGAA1210.10364114467789874No Hit
ATATATGGGATCTTCGCGTGGGAGGGGCTGGGGCTCTTTAAGGCTTTGTAGG1210.10364114467789874No Hit
ATAAGTGGGAGAATTTCCTTACCTGAAGGCACAACACTCTGAAACTTTAAAG1210.10364114467789874No Hit
GGATACGGGCTCTTTTCATCAAGATGAAGGCTGTTGGGTAAGAAAAACTAAG1210.10364114467789874No Hit
TATGCGGGGACTGAAATTTCAGCATTGAATTTTCGCATTAGAGCCTGAATAG1210.10364114467789874No Hit
GATAGGGATAGGGATCAAATGTGTTAGTTTGTGTTACCCTCATTGGAGAGCA1200.10278460629213099No Hit
CACGTGGGTACCCTAAACTAGGATAATAATACTCTAGTCCATGAAATTGTAA1200.10278460629213099No Hit
TACGTCGGGTCTATAGAGGTGACATGTCTCTCCATTCCTCTCCAACCCTGCC1200.10278460629213099No Hit
AAGCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG1200.10278460629213099No Hit
CTAAACGGGAGGCGACTGCCACCACACCCAGCTAATTTTTTGTATTTTTAGT1190.10192806790636322No Hit
AGGTGTGGGTGTTCTAATGACAGTCTGGTTTTTATTTGGGAAGGGACTGAGG1190.10192806790636322No Hit
TTTGTCGGGGAAACAAGCTGGAAAACGCATTTCAGGATATTACCCAGGAGAA1190.10192806790636322No Hit
TTATGGGAGTGGATGACCATGCCATAAACTTAGCCATGAAGAAATAGAAGGT1190.10192806790636322No Hit
TACAGTGGGAAGGCCAGTGATCCAGCAAAGGGGGAAAAATATGCATTTCACC1190.10192806790636322No Hit
TGCCTCGGGACATGACAGATGGGTGCGTCTGTCATCCCAGTGTGAGATAAGA1190.10192806790636322No Hit
ACGACAGGGAACCTCTTGAACTATCTTTTTGTAGCCATGAAAGCAGAGTATA1190.10192806790636322No Hit
TAATAAGGGATTCGAGGCCCAGCTGCTCCTGCGCTCACGGCATGTATAATTA1180.10107152952059546No Hit
CAACTTGGGAAGTGGGGTGACAGCAAATGACTTGCAGGTAGTCTCATTGTAG1180.10107152952059546No Hit
TCGCCTGGGGGGAACTGGCGGCGATCCCGAGGCAGGGAGGAGCCGGTGGTGC1180.10107152952059546No Hit
TTTAATGGGAACCACGGTTATTTAAGCATAATCTGAAAACATCTAGCCCAAA1180.10107152952059546No Hit
TAATACGGGCTATCACACAAATTCAGCTGCACCCCTAAAGGTCTTCAGAAGA1180.10107152952059546No Hit
CGCTCAGGGGTTAGTAAAATATCCAAATGAAAGTGTGCAGCAGGCAGTTGGG1180.10107152952059546No Hit
GTCTAAGGGGAACATTAAACAGAAGAAATCATTTTTTTGCTATGTAATACCT1170.10021499113482771No Hit
TTGACCGGGCATAAATCCAAGGGGAGGAGAAATAAACCCCACTAGTTATGCA1170.10021499113482771No Hit
AAGTATGGGCTGGTCTTGAAATTCCTAGTTTAATTCGCCTTGATGTTCTGCC1170.10021499113482771No Hit
GTATGAGGGATGTCACAAACTAGGTGGCCTGAAACAACAGAAATTGATTCTT1170.10021499113482771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)