FastQCFastQC Report
Sat 31 Dec 2022
SRR5848027.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848027.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences212690
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT7880.37049226573886873No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC6250.29385490620151394No Hit
CAAGTTGGGCGCAAGTCCCATGAAGCTGAGGTCTTGAAGCAGCTGGCTGAGA2420.11378061968122619No Hit
AGGTAAGGGAGCCAAGTTTTTTCTAAAACTCTTACGGGAAGGCGTGTGGATG2360.11095961258169165No Hit
GGTTAAGGGGAGTCTGTATGGCTTCCAACAGTCAAAATACTGCCTGGCCTTT2330.10954910903192439No Hit
TCTGCAGGGAGTGCTTAATATGTGTAAGGACTTCCTCTTTAAATTTGGTACC2320.10907894118200197No Hit
TCAAGAAGGGCAAAAGAAGTAAAATTATCACGAATTACAGATGACATGATCC2280.10719826978231228No Hit
TAACGAGGGGAGTCGCCGCCGTCGCTGCCGCTGCCGCTGCCGCCGTCGTTGT2230.10484743053270017No Hit
ACTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAAATGGGATT2220.10437726268277775No Hit
TGCCCAGGCCAGAATGCGACGGCACAATCTCGGATCACTGCAACCTCCGCCT2190.10296675913301048No Hit
GCAGGGAAGAAACCAAAAACCAGAGTGTCCCTCTTAGCTGCTGCAGAGAGAC2190.10296675913301048No Hit
CGACGGGCAGGCAGTGAGGAATCCTGAAACACCAGGAGAGGCGTCAGAAGTA2160.10155625558324322No Hit
AGCATGGGGGCAGAAGGGAAACGTGAAGAAGGTGAAGATGGCGGTGGCCAGG2140.10061591988339838No Hit
GTCGTGGGGCTGTACTTAGTCACGGGGATGGTGGAAGAGGGAGAAGAGGAAG2140.10061591988339838No Hit
CGATTAGGGTCTGATATCCAGGTGAAAGAACCGGAGAAGCGTGCCTCAGGCC2140.10061591988339838No Hit
ATTCAAGGGCAACTGACTGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTT2130.10014575203347595No Hit
CCATGAGGGGGCGGGGGCGGAGGAGGAGCGAGCCGGGCCGGGGGGCAGCTGC2130.10014575203347595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)