FastQCFastQC Report
Sat 31 Dec 2022
SRR5848026.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848026.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences216406
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGCCGTCT7390.3414877591194329No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATGCCTGTATCTCGTATGC6190.28603643152223135No Hit
TAGTGCGGGATGATTTAACAAGTGGAAAGAACATCTCTTTCCTTCCATTTTC2660.12291710950713011No Hit
CAAGTTGGGCGCAAGTCCCATGAAGCTGAGGTCTTGAAGCAGCTGGCTGAGA2520.11644778795412328No Hit
TAACGAGGGGAGTCGCCGCCGTCGCTGCCGCTGCCGCTGCCGCCGTCGTTGT2440.11275103278097649No Hit
CGACGGGCAGGCAGTGAGGAATCCTGAAACACCAGGAGAGGCGTCAGAAGTA2350.10859218321118638No Hit
TTACGTGGGGCTCCCAAGGGAGAGTTTGGGGTGTACCTGGTGTCTGATGGCA2290.1058196168313263No Hit
CGATTAGGGTCTGATATCCAGGTGAAAGAACCGGAGAAGCGTGCCTCAGGCC2280.10535752243468295No Hit
TGCTACGGGCAGTTTTGATTTTTCAAACACTTGGGTGAGATCCAATTTATCT2280.10535752243468295No Hit
TTGTCTGGGCAGATGCTGCAGGCCATGGTGCATGGGGTGACCACAGAGGAGT2240.10350914484810957No Hit
GCAAACGGGGCTCAGTTGCTTCCACAGCTCCTGGCTCAGTGCTGCACACACA2210.10212286165817953No Hit
AATGCTGGGAGTCCTAAAGTGTACTTCATGAAGCAGACCATTGGGAATTCCT2210.10212286165817953No Hit
CCATGAGGGGGCGGGGGCGGAGGAGGAGCGAGCCGGGCCGGGGGGCAGCTGC2210.10212286165817953No Hit
GCTAGTGGGAGGCTAGGGCGGGTGCTTCGAGCTAAAAAAGGGATGGTTGCAG2210.10212286165817953No Hit
CCGACAGGGGGTGCCCTTGACAGGCAGGGAGGGCTAGGCTGTGCATCCCTCC2210.10212286165817953No Hit
CCACAGCGGGGGCTTCCGAACATCCTGCTCACCGGTACACCAGGGGTTGGAA2200.1016607672615362No Hit
ACAGATGGGAATACTAGAATTGTCTGCAAAATATAGTAAGAAGAATTGGAGC2200.1016607672615362No Hit
TAAGCCGGGGGTGTGTGGCAGGCGGCGAAGCGCTCTGGAGAATCCCGGACAG2200.1016607672615362No Hit
AGGCCTGGGATCCCCAAAGATATTACAGGGTAGACACGTTTTAACTGAAATC2190.10119867286489284No Hit
ACACTGGGGGCATCACAAAAATGACCAAAAAACGTTTCTGAATGTTTTTAAA2190.10119867286489284No Hit
CTCGGAGGCTGAACCGTCTGAGCCCAGAAGTGCTGAGGTGACGAGGAAGCCC2190.10119867286489284No Hit
CCAAACATAAAGAGAACTTGCAGCACACACAGGCTGAAGAGGAAGCCCACCT2180.10073657846824949No Hit
TTAGGTGGACCAGCGCGAGATCGAGCAGCTGGTGGGCGACGACCCCCAGCGC2170.10027448407160615No Hit
TCTGCAGGGAGTGCTTAATATGTGTAAGGACTTCCTCTTTAAATTTGGTACC2170.10027448407160615No Hit
GAATTTAGGGAAAAGGAATGTGTGTTTATTAATTAACCTGCCAACATCCCTA2170.10027448407160615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)