FastQCFastQC Report
Sat 31 Dec 2022
SRR5848015.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848015.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125875
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGCCGTCT15161.204369414101291No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGC14661.1646474677259184No Hit
CATGTTGGGGAACCCAGAATGAGAGGCAGAATGCGACAAAAGGATCTAAATG2170.1723932472691162No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTC2110.1676266137040715No Hit
CTGCCAGGGTGGACGGCGACCTGGCGGGCCGATACTACGCGCTCAAGAGCAT1690.1342601787487587No Hit
ATTGGCGGGGACCTGCTCAAGGTCAGTGTCATCTTTGTGTTTAGCTCATCCA1680.13346573982125123No Hit
GCAGCTGGGGAATTCTATGTAGAAACTTGCATACTTTGAGATATGAACAAAT1440.1143992055610725No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCA1430.11360476663356503No Hit
CACACTGGGGTAGGGAACAAATGTGATCTGACCACAAAGAAAGTAGTAGACT1410.11201588877855016No Hit
GGCTGCGGAGGTGGAGGTTCAAGACGGCCCCAATGAAGATGGGGAGATGTTC1340.10645481628599801No Hit
ACGCACGGGTGCTGCCTGCCATGTGTGAGTCACTTCTACGCATAAACTAGAT1300.10327706057596821No Hit
GCTTCCGGGGCGCGGGCTGCGGGGCCCGGCGGCCTGGACGGCGGAGCGTTGA1300.10327706057596821No Hit
GAGGTGGGGATTGAACCTCACACGAACCTCCAGGAGTAGAAAAGGCAAGAAA1300.10327706057596821No Hit
GTAGACGGGAGTTTATGTCTGTAGAACTGTTATTTTATGCCCCACTTCCTTT1280.10168818272095334No Hit
AGTGAGGGCTTGTAAGCAGAAAACAAGCCCTCTCTCTTGTGAAGTATCTTCA1280.10168818272095334No Hit
AATCTTGGGGCTCTACCGGCGGGATTTGATGGCGTGATGTCTCACAGAAAGT1280.10168818272095334No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGT1270.10089374379344587No Hit
CAGTTAGGGTTCAGTCAGCCATCTGAAAGTAATTTTTCTGTCTGGTATGTGG1270.10089374379344587No Hit
CCACACAGGTACTGTTTCTCATTTACAGTGAGACCTGGCAAGGATGATGTTG1270.10089374379344587No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)