FastQCFastQC Report
Sat 31 Dec 2022
SRR5848013.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848013.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123112
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGCCGTCT14741.1972837741243745No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGC13601.1046851647280524No Hit
CATGTTGGGGAACCCAGAATGAGAGGCAGAATGCGACAAAAGGATCTAAATG2230.18113587627526156No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTC1850.1502696731431542No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCA1530.1242770810319059No Hit
ATTGGCGGGGACCTGCTCAAGGTCAGTGTCATCTTTGTGTTTAGCTCATCCA1450.11777893300409384No Hit
CCACACAGGTACTGTTTCTCATTTACAGTGAGACCTGGCAAGGATGATGTTG1430.11615439599714081No Hit
CTGCCAGGGTGGACGGCGACCTGGCGGGCCGATACTACGCGCTCAAGAGCAT1400.11371759048671129No Hit
AATGCAGGGGCAAAATAAACAGCTCATATTTTACTATGATGATTTAAAAACA1320.10721944245889921No Hit
ACGCACGGGTGCTGCCTGCCATGTGTGAGTCACTTCTACGCATAAACTAGAT1310.10640717395542271No Hit
CAACGCGGGCGATCTGAAAGCGGGGGGGTCAGGATCATCAATGTCACTGTCT1310.10640717395542271No Hit
GTAGACGGGAGTTTATGTCTGTAGAACTGTTATTTTATGCCCCACTTCCTTT1260.10234583143804016No Hit
CTGTTAGGGAAGAAATCACAAGAAAGTTTAGGATGTATTTCAAAGAATATGG1260.10234583143804016No Hit
GAGGTGGGGATTGAACCTCACACGAACCTCCAGGAGTAGAAAAGGCAAGAAA1240.10072129443108714No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)