FastQCFastQC Report
Sat 31 Dec 2022
SRR5847988.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847988.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88052
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGCCGTCT11631.320810430200336No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCTCGTATGC10071.1436423931313313No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTC1850.21010312088311453No Hit
TGAACGGGACCATCCCCTGTTCTTTGACTGATGAAATCGGCATATGATAAGG1320.14991141598146548No Hit
CACACGGGCGATCTAGTCGAGGGGCCCGGGAGCCAACCGAGGGCGTTCCTGT1320.14991141598146548No Hit
GAACTGGGCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACG1310.14877572343615136No Hit
ACAACAGGGTATTGTATTTGTAACAGTATGTGTTTAAAAATAAGTATAAATA1300.14764003089083724No Hit
GTTAAAGGGTATTGCACTGAAGAAGGTTGCATCACGGCTCAAGAAAAAAAGG1250.14196156816426656No Hit
AGTAGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1250.14196156816426656No Hit
GTTTATGGGACTTCAGCAACTCCTCTGAAAGATAACACACAACAGTTTAGAG1250.14196156816426656No Hit
TCGCTTGGGAGCTGAGTCTGGAACATATGAAGTGAGGTTTACTTCTAAGAAC1220.13855449052832416No Hit
ATTTCTGGGGAGACGAAATAACATGAGCCACTATAATTATTGGCTCAGTTCC1220.13855449052832416No Hit
GTCTCTGGGGGGGGCCGGATAATGGCGGGCGCTGCAGAAGATGCGCGAGCTC1220.13855449052832416No Hit
ACTTAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1210.13741879798301004No Hit
GCAAAAGGGATCCTGGTGGCTAGCCAGTGCGGGGAGGCCCTGCCCTGGGATA1210.13741879798301004No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCGTCATCCTGTCTCTTATAC1190.13514741289238177No Hit
CTATGCGGGTGAACAATTAGAAGTACACTTGAAAACATATCAATAAATATGT1190.13514741289238177No Hit
CCCTCCACTGATATTCTAGCATTTATGGGTTTACTTTTGTTTACCTTTTGGA1190.13514741289238177No Hit
GTTAGCGGGGAGGGGCACCAACTCTTCCTGTGCAACGTGGAGCGTAGTGTGA1160.13174033525643936No Hit
ATGCTCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1150.13060464271112524No Hit
CACGCGGGGATAGATCACAGGCTTTTGCAATAAGAAAACAATCACTTGGGAT1150.13060464271112524No Hit
TTGCGAGGGTAATAGAGAAATAGAAAAAAGAATAGAAAATTCAGCCCCACAT1140.12946895016581111No Hit
CCCAGATGCAGGATGTTTTCAACCAGTAAATTTTATTGCTGTTGGTGCCAGA1140.12946895016581111No Hit
CACAACGGGAATGAGAGAAGGACCAAAGACATTATATTTCTTGGGTTTTATT1120.12719756507518284No Hit
GAAAATGGGGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAG1110.12606187252986872No Hit
AACTTGGGGAGAGAAGCGGGGCGAACTGAGGCGAGTGAAGTGGACTCTGAGG1110.12606187252986872No Hit
CATCGGGGTTAACTCTAGCCCTGACCTCTATTGATCTTTTGGGAATGAGGGC1110.12606187252986872No Hit
CAGTCAGGGTCTATTTATGTATATTAATAGATTTTTGGGTCTTATAGCCAGC1100.12492617998455459No Hit
GCCGAAGGGTGCTGCTTTTTGTGAGCTCCTTTTACAAAGAATACCTTTCTGT1100.12492617998455459No Hit
GATGCAGGGATTCTTAAGGTATGTACATTTTTTAGAAATTTAAGACTGTAGT1100.12492617998455459No Hit
TTCACGCGGGGACAGATGTTACTGCTGGTAGTGCTGCTTCTAATAGAGATTA1100.12492617998455459No Hit
TACGACGGGACCCACCGTGGAAGCTGAAGAAGGGAAGTATTTCCTGTCTCTC1090.12379048743924045No Hit
CACATAGGGGAGCCGCAGGAGGCACAGGCCTGTCCTGGGTCCCCGCAGGTCT1080.12265479489392632No Hit
CACACCGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAA1080.12265479489392632No Hit
TATGCCGGGGCTATGGGCCGCAACAAGAAGAAGAAGCGAGATGGTGACGACC1080.12265479489392632No Hit
GCGTGCGGGATGGACCCAAATCCTCGGGCCGCCCTGGAGCGCCAGCAGCTCC1070.12151910234861218No Hit
TGTACTCGGGGCACGAGAACGAAGTTCTTCGTCACCAGCTCTTTGCTGCCCC1070.12151910234861218No Hit
GGATGGGGGGATTAACAAGTTAGAGGTTAAAAAAAGAAAATAAAAGATACTC1070.12151910234861218No Hit
TCGAGAGGGACTACCTTAATGATAAGGACTCCTTAAAGTTCCATTTGCTAAT1060.12038340980329806No Hit
GTGCCCTGGTCGGGAGTCATATGCCTTAAAAATGACTGCGAGTCAGTGTGAA1060.12038340980329806No Hit
CTAAGAAAGGGAAGACCTGTCTTACAAAAGATTCCAAACGGAGTCTTTTATT1060.12038340980329806No Hit
CTAAAACGGGGTCTCTTAATGCATCCATAGAAAAGTGTTAATTGTGGGTTCA1060.12038340980329806No Hit
TTTACTGGGAGTTAGCAATAATTTATTGTATATTTCAAAATAGCTAGAAGAG1050.11924771725798393No Hit
TAAGCTGGGAGAACATATATATAAATGAACAGATGGGTGCTTTTTTTTTTTT1050.11924771725798393No Hit
GGCTCCGGGCAATGGATTCATGGAGTAGCCTGGACTGTTTCATAGTTTTCTA1050.11924771725798393No Hit
ACAACAGGGACAAGACCCTCCCCATAAGCAGGGGACCAGCATACCCGGGAGC1050.11924771725798393No Hit
AATCTAGGGTCCGATCTTTTGCAGGGAGGTGTTGGCATTCTTCGCTGATTTG1040.1181120247126698No Hit
AATGTCGGGAGGGCTGCCACGGCAACCGCCAAGCCCCCCTCAAGGTGGGACA1040.1181120247126698No Hit
TTAACCGGGATCCACATGGTGATCGGCATGTCCATGCGCATCTGCCAGATGC1040.1181120247126698No Hit
AGAAAAGGGGACCGGGTCTCAGAAGCAGATATCCAGAGGCTGCTTCATGGTG1040.1181120247126698No Hit
AAAAATGGGTATGAATGTGACGTAGCTTATTTGTTCATTATTTGTGGACATT1040.1181120247126698No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCGTCA1030.11697633216735566No Hit
GCCTATGGGGCGCGCTCGGTGACCTTTCCGAGTTGGCTGCAGATTTGTGGTG1030.11697633216735566No Hit
ATGAGAGGGAGTGAATGCATACACAAATACATATGCATATGACATCAAAAGG1020.11584063962204152No Hit
GGTTTTGGGCCTCCCTGTAAGAGAGAAAATCAGAAGAATTTGGAAAGTGTCA1020.11584063962204152No Hit
CTAACTCTGGGAGGAAGAAATACAAATTTTGTCATGTTTCTCAAGCAGTGTT1020.11584063962204152No Hit
ATAAGAGGGTTAGTCTACTGACTGCAAATGAACACTGGACTCCATGCATATT1020.11584063962204152No Hit
CGTTATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1010.11470494707672739No Hit
TCAGTGGGGCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATG1010.11470494707672739No Hit
TTTCTAGGGGTCAGCAGGCGGCGCGCTGTCCGCACTGCGGCACAGAGCCGCG1010.11470494707672739No Hit
TTTTGAGGGTCTCTGGCATGGAATTGTTAATTTTCTGACACGTCTAGATGTG1000.11356925453141326No Hit
CAATGAGGGATGTGAAGTTGATGGGTGAACGGGTATGTGATGATTGCTTACT1000.11356925453141326No Hit
TTAGCCAGGGACTGACAATTAACAGCCCAATATCTACAATCAACCAACAAGT1000.11356925453141326No Hit
GTGGAAGGGCAACTTGTCTTTGCTGTACTAGGCCACAAAATCCACTGTTAGG1000.11356925453141326No Hit
CGCATGGGGATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCC990.11243356198609913No Hit
CCAGCAGGGCTGTGGAGAGGAGACAGCGCTCATCGAGTCCATTGAGGGCAAG990.11243356198609913No Hit
CTTATAGGGTTACAATACAATTACAGGACATGGACATCTGTAGAGTTTGAAA990.11243356198609913No Hit
GACTAAGGGAATCACATTACTTTTATTCACATCTGTCTACTGATGCCATTCC990.11243356198609913No Hit
GATTTGGGGGAGTTTTATCTATGCTTGCACATATATAGAATGTAAAAATATA990.11243356198609913No Hit
TGCTCTGGGGCTGGCCAAGGGGTTTTGGTGCATGTCCAGTTAGGCTTTTCTC990.11243356198609913No Hit
TACATAGGGACGCATCTTCCGTACTGCTTGTATTAGGATGCAAGATTGAATG990.11243356198609913No Hit
TGTTGCGGGTACGGCGGGCCAGGAGTTGAGGGCAGCCTGGGCAACACAGCGA990.11243356198609913No Hit
GTGGTAGGGTAGTCCTGGAAATAGACATACCCAAATTATACAGAGCAGGAAC990.11243356198609913No Hit
TGCGTGGGGGACCCTTTCCTTTTACACATGAGGAATGTAAGCCCAAAGAAGG980.111297869440785No Hit
AAGCCTGGGATTCTTTAAAAATCTTGCAATGTGCAAAATTATGCAGTGAAAA980.111297869440785No Hit
GCCAACGGGGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAG980.111297869440785No Hit
ACAGGTGGGATGATGATGGTGATGATGACGATGAGTTTAATCATTGTTCATT970.11016217689547086No Hit
GTACCAGGGATTGACGGCAAATCTATACTGTTCCTTGGTTTTAGAGTTGGGT970.11016217689547086No Hit
AACTTTGGGCAGCCACAGAAGAGAGCACTGTGCCCACCACCCAAAGCAGTGC960.10902648435015673No Hit
TCGCTTGGGATGGATACCCCATTTACCCTGTGATTATTATGCATTGCACGCC960.10902648435015673No Hit
ATTTGGGCCAGGGCTGCTGAGGGCTGCCTCTTGACAGTGCAGTCTTATCGAG960.10902648435015673No Hit
CATTCAGGGCTAAAAGGATGAAAAAAATTAGCAAACCGAAGTTTCTTCAATG960.10902648435015673No Hit
TCTTTTGGGATTATCTAGTAGGTCTGCACACATAACACACATCAGTCCACCC950.1078907918048426No Hit
CTCTAAGGGGAACAAATGTTTAACTTTTACCAATGACGTTAGTACAAACAAG950.1078907918048426No Hit
CAGCCTGGGTGACAGAGCGAGACTCTGTCTTAAAACAAAACAAAAAAGATTA950.1078907918048426No Hit
TATTACGGGTGCCCAGTGGCAGAAGAGACCAGCCCTCCTCCCATGCCCGGTC950.1078907918048426No Hit
ACTCCAGGGATTATTAAATCTCTCAGTGTTAGAAGAGGCAATCTGGCATAAA950.1078907918048426No Hit
ACCTGGGCGAGACGTCGGCTTTCCAACCTGGCAGGACCCAGGACGCATTGCT950.1078907918048426No Hit
GTGTTGGGCTGTGGGAAATCTGTGAGAGGGAATGGGGTGGGAGATGTGGGGG940.10675509925952846No Hit
GCCACTGGGAGATGTGTCTGATGCTGTTAATGTGATGGTGTATGTTGGGATT940.10675509925952846No Hit
ACAGCAGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC940.10675509925952846No Hit
ACTTAAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA940.10675509925952846No Hit
GGAAACGGGGGTATAAATATTATTTATTTCAGGTAGAATTTTTTTGGTGTAG940.10675509925952846No Hit
TTGAGGTGGGGAGTATGTCATCCGCTGCACCAAACACACCTTCACCAACCAC930.10561940671421433No Hit
TTCGCCGGGATGATGGAGCAATGGGACAAGTACCTGGAAGACTTCTCCACCT930.10561940671421433No Hit
TGCAAGGGATTAGAAAAGACAGTGCTTTTCTTTCCAACCTCTTTAGTTTTTT930.10561940671421433No Hit
GCTTATGGGATTCAAGTTGTTTGATACCAGACAGAAAGCTGACAGTCTGTTC930.10561940671421433No Hit
ATCGCGGGGGCTTCCCGGGTTCAAGCATTTCTCCTGTCTCAGCCTCCCCAGT930.10561940671421433No Hit
GTTTGAGGTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGC930.10561940671421433No Hit
GAGTAAGGGGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT930.10561940671421433No Hit
ACACATGGGAATAAATAAAAGTAAAAATGTGTTATCTAATTTCTGTGAAGCA920.10448371416890019No Hit
TTATTGGGGCGATCTGACGTTGGGGCAGTTCCTACCATTTTTAAGATGTTAA920.10448371416890019No Hit
AGTTTGGGGAGTCTACCCTCCCTTAGCAGGGAACTACTCCCACCCTGGAGCC920.10448371416890019No Hit
ATCCTAGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA920.10448371416890019No Hit
CTACCTGGGATCCTACAGCAAGGATGAAAGGCCCCTAGCCGTGAAAACAGTG920.10448371416890019No Hit
ATTCAAGGGTTGCAGAGGGAAATTATTTGTGATTAACAGATTTCTTTGAACA920.10448371416890019No Hit
AAAACAGGGATGGACCTTTTATTATTATTATTATTTGTAGTATAGCGCTTCC920.10448371416890019No Hit
TACTAGGGGTCTAGGGCTGTTAGAAGTCCTAGGAAAGTGACAGCGAGGGCTG920.10448371416890019No Hit
CGTCCAGGGATGGGTTTGGTTTTGTGATGTTTTTCCCTAATGGGAAAAACGT920.10448371416890019No Hit
GCTCGCGGGTGTTCTTGGCACCTTTGTCAAAAGGCAATTCACTGCAAATGTG920.10448371416890019No Hit
CTGCTTGGGAACAGAAGGTGACAGAAAATGATTTACACATTTTTTGACTCCT920.10448371416890019No Hit
TAGCTGGGTACAGAATCAGAGATGATGCAGTGTTTGAAGTTGGGTGCTTTAT910.10334802162358606No Hit
CAAGCTGGGAGAGATTGACTTCCTAAGCTACTTAAGACAACTTGCACCACTA910.10334802162358606No Hit
CAGTCAGGGGACGCCTTCCGATCTTGACCTGCAGCCTCTATTTCCCAGGCTC910.10334802162358606No Hit
AACTACGGGGAGTCGGAGCCAGCGCGAGCCGCCGCCGCCATCACTGCCGCTG910.10334802162358606No Hit
CGGGTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA910.10334802162358606No Hit
ACTGGGGTACCAGCCCACCGGGGGACAGCTGCTGTTGGATGGGAAGCCCCTT910.10334802162358606No Hit
TACAGTGGGAGTGTTCAAATCGTTTGCCCTTTAAAAAAACGGATCATTTGGA910.10334802162358606No Hit
AGAGTAGGGATAAATGTCATAGGAAGTCTAGTAGAAATTCTGAAATCTCTAG910.10334802162358606No Hit
TGCAAAGGGAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTATA910.10334802162358606No Hit
TGCTCTGGGCCGGCTGCTGGAGGAAGCAGCTATCCACAAAGCTTCCTGCCCC910.10334802162358606No Hit
CACCACGGGGCTAGTCCAGTGCTTGGCCAGTACAAGGCCATTATATATTTGT910.10334802162358606No Hit
GATGCCGGGACGAGGGAAGAAGGAACCAGACCTTAGTGCCACATATTTTTCT910.10334802162358606No Hit
GACACTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA910.10334802162358606No Hit
CGCGAAGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGAA900.10221232907827194No Hit
GCCACGGGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAGACTTA900.10221232907827194No Hit
TACTATGGGAAGAACAAATAAGATAGTTACCACGTGGTCATCTTTTACAAAC900.10221232907827194No Hit
ATGATAGGGATTGGAGAGATGCTGTCTGCTCTGTGAGTTTTGTAAAGAGAAA900.10221232907827194No Hit
TGCTAAGGGGGAGGGAAGGAATGTTACATAACTAAGTGGAGGCCTGGAACTG900.10221232907827194No Hit
AGCCGGGACAGAAGAAAAAAACAACTCAAGCATTCTGGTGGCAACATAGAGA900.10221232907827194No Hit
CGAACGGGGAGAGCCGCGGCAGAGGCAGAGGAGGGAGCTAGGAGGTGAGACC900.10221232907827194No Hit
ATGCAAGGGCCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGG890.1010766365329578No Hit
AGAAAAGGGGGGCCCTATTGTGAACCTAATGAATCAGTATCTCTGGGATGAA890.1010766365329578No Hit
ATAGCAGGGGAGCAGGGAAAATGGCGCTGGCCATGCTGGTCTTGGTGGTTTC890.1010766365329578No Hit
CGGGCTGGGCCCAATATTGTTAAAAGGAGAATTCTTATGTATACCTATCTCT890.1010766365329578No Hit
AGCCAGGGAGCAGAACTCTGGGTTTCTGATTTAGCCAGGGGTTCAAAGGCAG890.1010766365329578No Hit
TTCCATGGGTAGAGAACATGTTCTATAGAAGAGACAGAAGATGAAACTAGAT890.1010766365329578No Hit
GTACAGGGGGTTCTGAGGATTCCAAACAGAGGCATTGATTTACTGAAAAAAG890.1010766365329578No Hit
CTTCTTCGGGGATTCCAAATCACTTTTCTTCCCTTTTAAACAAACAGAAATC890.1010766365329578No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)